Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00090 and HSERO_RS00095 are separated by 19 nucleotides HSERO_RS00095 and HSERO_RS00100 are separated by 330 nucleotides
HSERO_RS00090: HSERO_RS00090 - hypothetical protein, at 26,030 to 27,307
_RS00090
HSERO_RS00095: HSERO_RS00095 - AMP-dependent synthetase, at 27,327 to 28,946
_RS00095
HSERO_RS00100: HSERO_RS00100 - type VI secretion protein, at 29,277 to 32,018
_RS00100
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.479 kb on - strand, within HSERO_RS00090 at 26.557 kb on + strand, within HSERO_RS00090 at 26.623 kb on - strand, within HSERO_RS00090 at 26.850 kb on - strand, within HSERO_RS00090 at 26.912 kb on + strand, within HSERO_RS00090 at 27.007 kb on + strand, within HSERO_RS00090 at 27.500 kb on + strand, within HSERO_RS00095 at 27.500 kb on - strand, within HSERO_RS00095 at 27.824 kb on - strand, within HSERO_RS00095 at 27.824 kb on - strand, within HSERO_RS00095 at 27.845 kb on + strand, within HSERO_RS00095 at 27.845 kb on - strand, within HSERO_RS00095 at 27.860 kb on - strand, within HSERO_RS00095 at 27.955 kb on + strand, within HSERO_RS00095 at 28.183 kb on + strand, within HSERO_RS00095 at 28.194 kb on - strand, within HSERO_RS00095 at 28.249 kb on + strand, within HSERO_RS00095 at 28.292 kb on + strand, within HSERO_RS00095 at 28.342 kb on + strand, within HSERO_RS00095 at 28.350 kb on - strand, within HSERO_RS00095 at 28.710 kb on - strand, within HSERO_RS00095 at 28.752 kb on - strand, within HSERO_RS00095 at 28.937 kb on - strand at 28.984 kb on + strand at 29.019 kb on + strand at 29.027 kb on - strand at 29.215 kb on + strand at 29.591 kb on - strand, within HSERO_RS00100 at 29.596 kb on + strand, within HSERO_RS00100 at 29.609 kb on - strand, within HSERO_RS00100 at 29.846 kb on + strand, within HSERO_RS00100 at 29.881 kb on - strand, within HSERO_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 26,479 - HSERO_RS00090 0.35 -0.3 26,557 + HSERO_RS00090 0.41 -0.2 26,623 - HSERO_RS00090 0.46 -0.4 26,850 - HSERO_RS00090 0.64 -0.2 26,912 + HSERO_RS00090 0.69 +1.1 27,007 + HSERO_RS00090 0.76 +0.5 27,500 + HSERO_RS00095 0.11 +0.1 27,500 - HSERO_RS00095 0.11 +0.1 27,824 - HSERO_RS00095 0.31 -1.4 27,824 - HSERO_RS00095 0.31 -0.3 27,845 + HSERO_RS00095 0.32 +0.7 27,845 - HSERO_RS00095 0.32 +1.3 27,860 - HSERO_RS00095 0.33 -0.3 27,955 + HSERO_RS00095 0.39 -0.2 28,183 + HSERO_RS00095 0.53 +0.1 28,194 - HSERO_RS00095 0.54 -0.2 28,249 + HSERO_RS00095 0.57 +0.6 28,292 + HSERO_RS00095 0.60 -0.4 28,342 + HSERO_RS00095 0.63 -0.3 28,350 - HSERO_RS00095 0.63 +0.2 28,710 - HSERO_RS00095 0.85 -0.3 28,752 - HSERO_RS00095 0.88 -0.7 28,937 - -0.5 28,984 + -0.2 29,019 + -0.1 29,027 - +0.6 29,215 + -1.5 29,591 - HSERO_RS00100 0.11 +1.0 29,596 + HSERO_RS00100 0.12 -0.3 29,609 - HSERO_RS00100 0.12 +1.0 29,846 + HSERO_RS00100 0.21 +0.8 29,881 - HSERO_RS00100 0.22 +0.8
Or see this region's nucleotide sequence