Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03945

Experiment: PYE with Nalidixic 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.03 mg/ml
1,144,466	+		CCNA_01047	0.82	+1.0
1,144,466	+		CCNA_01047	0.82	-0.9
1,144,466	+		CCNA_01047	0.82	-0.6
1,144,466	+		CCNA_01047	0.82	-1.1
1,144,466	+		CCNA_01047	0.82	-1.1
1,144,474	-		CCNA_01047	0.82	-1.1
1,144,474	-		CCNA_01047	0.82	-0.2
1,144,474	-		CCNA_01047	0.82	-2.5
1,144,474	-		CCNA_01047	0.82	+0.5
1,144,474	-		CCNA_01047	0.82	+0.3
1,144,474	-		CCNA_01047	0.82	-1.6
1,144,481	-		CCNA_01047	0.83	+0.9
1,144,512	+		CCNA_01047	0.84	-0.1
1,144,534	+		CCNA_01047	0.85	-0.2
1,144,535	+		CCNA_01047	0.85	+0.5
1,144,544	-		CCNA_01047	0.85	+0.1
1,144,545	+		CCNA_01047	0.85	+3.1
1,144,552	+		CCNA_01047	0.85	+0.1
1,144,567	+		CCNA_01047	0.86	-0.3
1,144,601	-				+2.1
1,144,601	-		CCNA_01047	0.87	-2.3
1,144,606	-		CCNA_01047	0.87	-1.3
1,144,608	+		CCNA_01047	0.87	-1.6
1,144,608	-				+0.5
1,144,609	+		CCNA_01047	0.87	-3.0
1,144,616	-		CCNA_01047	0.88	-2.0
1,144,616	-		CCNA_01047	0.88	-0.9
1,144,619	+		CCNA_01047	0.88	-1.1
1,144,626	-		CCNA_01047	0.88	+1.4
1,144,627	+		CCNA_01047	0.88	-0.6
1,144,627	+		CCNA_01047	0.88	-0.2
1,144,628	+		CCNA_01047	0.88	+0.7
1,144,629	-		CCNA_01047	0.88	-0.5
1,144,635	-		CCNA_01047	0.88	-1.1
1,144,641	-		CCNA_01047	0.89	-1.9
1,144,654	-		CCNA_01047	0.89	-1.0
1,144,655	+		CCNA_01047	0.89	-2.0
1,144,721	+				-2.5
1,144,721	+				-0.1
1,144,721	+				-0.1
1,144,729	-				-1.2
1,144,729	-				+1.8
1,144,729	-				+0.3
1,144,740	-				+0.9
1,144,760	+				-0.2
1,144,778	+				-1.3
1,144,778	-				-1.3
1,144,798	+				-1.2
1,144,823	+				-1.5
1,144,841	+				+0.3
1,144,841	+				-1.3
1,144,846	+				-0.8
1,144,852	+				+0.9
1,144,934	+				-1.1
1,144,942	-				-1.7
1,145,071	-				-0.3
1,145,081	-				-1.8
1,145,086	-				-1.4
1,145,086	-				-0.8
1,145,092	-				+1.9
1,145,103	+				-1.6
1,145,111	-				+0.0
1,145,113	-				+0.0
1,145,153	-		CCNA_01048	0.18	+0.1
1,145,157	+		CCNA_01048	0.19	-0.9
1,145,205	+		CCNA_01048	0.38	-0.7
1,145,243	-		CCNA_01048	0.52	-1.3
1,145,243	-		CCNA_01048	0.52	+0.1
1,145,243	-		CCNA_01048	0.52	+0.8
1,145,246	+		CCNA_01048	0.53	-1.9
1,145,273	+		CCNA_01048	0.63	-1.9
1,145,273	+		CCNA_01048	0.63	+0.8
1,145,273	+		CCNA_01048	0.63	-2.9
1,145,273	+		CCNA_01048	0.63	+1.5
1,145,273	+		CCNA_01048	0.63	-0.9
1,145,273	+		CCNA_01048	0.63	+1.1
1,145,273	+		CCNA_01048	0.63	-0.6
1,145,273	+		CCNA_01048	0.63	-0.6
1,145,273	+		CCNA_01048	0.63	+0.9
1,145,281	-		CCNA_01048	0.66	+1.7
1,145,281	-		CCNA_01048	0.66	+1.2
1,145,281	-		CCNA_01048	0.66	+1.0
1,145,281	-		CCNA_01048	0.66	+1.1
1,145,281	-		CCNA_01048	0.66	+1.0
1,145,281	-		CCNA_01048	0.66	+1.3
1,145,281	-		CCNA_01048	0.66	+0.7
1,145,281	-		CCNA_01048	0.66	+1.4
1,145,281	-		CCNA_01048	0.66	+1.8
1,145,281	-		CCNA_01048	0.66	+1.2
1,145,281	-		CCNA_01048	0.66	+1.7
1,145,281	-		CCNA_01048	0.66	+0.9
1,145,281	-		CCNA_01048	0.66	+1.4
1,145,281	-		CCNA_01048	0.66	+1.1
1,145,281	-		CCNA_01048	0.66	+1.1
1,145,281	-		CCNA_01048	0.66	+0.9
1,145,281	-		CCNA_01048	0.66	+1.2
1,145,281	-		CCNA_01048	0.66	+1.4
1,145,283	+		CCNA_01048	0.67	+0.2
1,145,340	-		CCNA_01048	0.89	-0.2
1,145,340	-		CCNA_01048	0.89	-1.5
1,145,340	-		CCNA_01048	0.89	-1.8
1,145,351	-				+0.6
1,145,364	-				-1.5
1,145,371	-				-1.6
1,145,395	-				-1.0
1,145,401	+				+3.7
1,145,411	+				-1.0
1,145,416	+				+0.4
1,145,450	+				-0.5
1,145,506	-		CCNA_03945	0.34	-1.0
1,145,518	-		CCNA_03945	0.42	-1.3
1,145,530	-		CCNA_03945	0.50	-2.2
1,145,547	-		CCNA_03945	0.61	-0.6
1,145,562	+		CCNA_03945	0.71	+0.5
1,145,570	-		CCNA_03945	0.76	-1.5
1,145,589	-		CCNA_03945	0.88	-0.5
1,145,589	-		CCNA_03945	0.88	-1.9
1,145,589	-		CCNA_03945	0.88	-1.3
1,145,612	-				-0.2
1,145,656	+				-0.5
1,145,664	-				-0.5
1,145,664	-				-1.1
1,145,669	-				-0.6
1,145,669	-				-0.2
1,145,674	+				-0.5
1,145,680	+				+1.5
1,145,688	-				-1.3
1,145,713	+				-0.7
1,145,722	-		CCNA_01049	0.10	-1.9
1,145,772	-		CCNA_01049	0.21	-0.9
1,145,809	+		CCNA_01049	0.28	+0.2
1,145,823	+		CCNA_01049	0.31	-0.1
1,145,826	-		CCNA_01049	0.32	-0.8
1,145,827	-		CCNA_01049	0.32	+1.1
1,145,831	-		CCNA_01049	0.33	+1.0
1,145,871	+		CCNA_01049	0.41	-0.9
1,145,871	+		CCNA_01049	0.41	-1.5
1,145,879	-		CCNA_01049	0.43	-0.1
1,145,891	+		CCNA_01049	0.45	+0.0
1,145,909	+		CCNA_01049	0.49	-0.8
1,145,939	+		CCNA_01049	0.55	-1.8
1,145,939	+		CCNA_01049	0.55	+0.9
1,145,939	+		CCNA_01049	0.55	-1.3
1,145,947	-		CCNA_01049	0.57	-0.7
1,145,949	-		CCNA_01049	0.57	-0.8
1,145,951	-		CCNA_01049	0.58	-0.8
1,145,961	-		CCNA_01049	0.60	-1.8
1,146,008	+		CCNA_01049	0.70	-2.5
1,146,008	-		CCNA_01049	0.70	-0.4
1,146,073	+		CCNA_01049	0.83	+1.6
1,146,127	+				-1.9
1,146,192	+				+0.5
1,146,193	-				-1.3
1,146,193	-				-2.1
1,146,224	+				-0.1
1,146,267	+				-1.2
1,146,277	+				+0.8
1,146,280	+				+0.1
1,146,348	-				-1.1
1,146,360	-				+1.3
1,146,362	-				+1.4
1,146,378	+				+1.0
1,146,397	+				-0.1
1,146,401	+				-0.9
1,146,405	-				-0.8
1,146,428	+				-0.3
1,146,428	+				-0.0
1,146,433	+				+1.4
1,146,436	-				-1.0
1,146,449	+		CCNA_01050	0.10	-0.1
1,146,545	+		CCNA_01050	0.16	+0.8
1,146,605	+		CCNA_01050	0.20	+1.0
1,146,605	+		CCNA_01050	0.20	-0.2
1,146,605	+		CCNA_01050	0.20	-0.6