Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03263

Experiment: PYE with Nalidixic 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.03 mg/ml
3,430,974	-		CCNA_03262	0.29	-1.9
3,430,980	+		CCNA_03262	0.30	+0.5
3,430,983	-		CCNA_03262	0.30	+0.9
3,430,988	-		CCNA_03262	0.31	+1.2
3,431,022	+		CCNA_03262	0.35	-0.4
3,431,030	-		CCNA_03262	0.36	-1.2
3,431,042	+		CCNA_03262	0.38	+0.8
3,431,050	-		CCNA_03262	0.39	+1.2
3,431,075	-		CCNA_03262	0.43	-0.6
3,431,086	+		CCNA_03262	0.44	-2.2
3,431,157	-		CCNA_03262	0.54	+1.1
3,431,196	-		CCNA_03262	0.59	-0.2
3,431,213	-		CCNA_03262	0.62	+0.5
3,431,248	-		CCNA_03262	0.66	+1.7
3,431,285	-		CCNA_03262	0.71	+0.3
3,431,286	-		CCNA_03262	0.72	-1.4
3,431,372	-		CCNA_03262	0.83	-0.2
3,431,377	-		CCNA_03262	0.84	-2.3
3,431,377	-		CCNA_03262	0.84	+1.5
3,431,400	+		CCNA_03262	0.87	-0.8
3,431,400	+		CCNA_03262	0.87	-0.5
3,431,416	+		CCNA_03262	0.89	+0.3
3,431,434	+				-1.2
3,431,434	-				-1.6
3,431,442	-				-0.6
3,431,442	-				-1.2
3,431,499	+				-0.6
3,431,499	+				-1.4
3,431,499	+				-1.6
3,431,535	+				-0.5
3,431,535	+				-0.8
3,431,535	+				-1.6
3,431,535	+				-1.1
3,431,535	-				-0.6
3,431,535	-				+0.2
3,431,543	-				-0.6
3,431,543	-				+0.3
3,431,543	-				-0.3
3,431,543	-				-0.2
3,431,543	-				+2.2
3,431,561	+				-2.4
3,431,561	+				-0.6
3,431,569	-				-0.2
3,431,569	-				-0.1
3,431,810	-				-1.5
3,431,873	-				+0.9
3,431,887	-				+0.3
3,431,889	+				+1.5
3,431,889	+				-2.8
3,431,897	-				-0.9
3,431,976	-				+0.1
3,431,996	+				-1.2
3,432,059	-				-1.7
3,432,146	-				-1.6
3,432,152	-				-0.1
3,432,152	-				+0.8
3,432,154	+				-2.3
3,432,162	-				-2.6
3,432,162	-				+0.7
3,432,307	-		CCNA_03263	0.12	-0.2
3,432,347	+		CCNA_03263	0.14	-1.6
3,432,359	+		CCNA_03263	0.14	-0.6
3,432,359	+		CCNA_03263	0.14	-0.8
3,432,374	-		CCNA_03263	0.15	+0.9
3,432,392	-		CCNA_03263	0.15	-1.2
3,432,401	+		CCNA_03263	0.16	-1.2
3,432,401	+		CCNA_03263	0.16	+0.6
3,432,402	-		CCNA_03263	0.16	-2.0
3,432,408	+		CCNA_03263	0.16	-1.6
3,432,482	+		CCNA_03263	0.18	-1.8
3,432,511	-		CCNA_03263	0.19	-0.6
3,432,528	+		CCNA_03263	0.20	-2.0
3,432,536	-		CCNA_03263	0.20	-1.0
3,432,572	+		CCNA_03263	0.22	+1.1
3,432,580	-		CCNA_03263	0.22	-1.7
3,432,581	-		CCNA_03263	0.22	-0.2
3,432,582	+		CCNA_03263	0.22	-1.6
3,432,655	-		CCNA_03263	0.25	+0.1
3,432,701	-		CCNA_03263	0.26	-0.7
3,432,723	-		CCNA_03263	0.27	-2.1
3,432,755	+		CCNA_03263	0.28	-1.2
3,432,755	+		CCNA_03263	0.28	+0.3
3,432,763	-		CCNA_03263	0.28	-0.7
3,432,830	+		CCNA_03263	0.31	-2.1
3,432,833	-		CCNA_03263	0.31	-0.8
3,432,836	+		CCNA_03263	0.31	-1.7
3,432,844	-		CCNA_03263	0.31	-0.7
3,432,851	+		CCNA_03263	0.32	+0.1
3,432,859	-		CCNA_03263	0.32	-0.6
3,432,859	-		CCNA_03263	0.32	+1.4
3,432,883	-		CCNA_03263	0.33	-1.3
3,432,900	+		CCNA_03263	0.33	-0.7
3,432,946	-		CCNA_03263	0.35	-0.8
3,432,957	+		CCNA_03263	0.35	+0.3
3,432,965	-		CCNA_03263	0.36	-1.4
3,432,969	-		CCNA_03263	0.36	-0.3
3,432,996	-		CCNA_03263	0.37	-1.1
3,433,013	+		CCNA_03263	0.37	+0.1
3,433,013	+		CCNA_03263	0.37	+0.1
3,433,013	+		CCNA_03263	0.37	-1.0
3,433,013	+				+0.8
3,433,013	+		CCNA_03263	0.37	-1.9
3,433,018	+		CCNA_03263	0.37	-1.7
3,433,021	+		CCNA_03263	0.38	-1.2
3,433,021	-		CCNA_03263	0.38	-1.7
3,433,021	-		CCNA_03263	0.38	-0.0
3,433,032	+		CCNA_03263	0.38	-0.2
3,433,032	+		CCNA_03263	0.38	+0.1
3,433,040	-		CCNA_03263	0.38	+0.1
3,433,040	-		CCNA_03263	0.38	-1.3
3,433,040	-		CCNA_03263	0.38	+0.8
3,433,056	+		CCNA_03263	0.39	-1.2
3,433,056	+		CCNA_03263	0.39	-1.7
3,433,064	-		CCNA_03263	0.39	-0.2
3,433,092	+		CCNA_03263	0.40	+0.1
3,433,107	+		CCNA_03263	0.41	-1.3
3,433,107	+		CCNA_03263	0.41	-1.2
3,433,113	+		CCNA_03263	0.41	-2.3
3,433,115	-		CCNA_03263	0.41	-0.7
3,433,143	+		CCNA_03263	0.42	-1.7
3,433,180	-		CCNA_03263	0.43	+0.1
3,433,183	-		CCNA_03263	0.43	-0.2
3,433,211	-		CCNA_03263	0.44	-1.6
3,433,232	+		CCNA_03263	0.45	-1.1
3,433,237	+		CCNA_03263	0.45	-0.6
3,433,242	+		CCNA_03263	0.45	-1.1
3,433,245	-		CCNA_03263	0.46	-2.2
3,433,275	+		CCNA_03263	0.47	-0.6
3,433,283	-		CCNA_03263	0.47	-0.7
3,433,287	+		CCNA_03263	0.47	-1.0
3,433,287	+		CCNA_03263	0.47	-0.6
3,433,302	-		CCNA_03263	0.48	-0.4
3,433,332	-		CCNA_03263	0.49	-0.5
3,433,332	-		CCNA_03263	0.49	-0.1
3,433,342	-		CCNA_03263	0.49	-2.0
3,433,347	-		CCNA_03263	0.49	+0.5
3,433,380	+		CCNA_03263	0.50	+0.8
3,433,380	+		CCNA_03263	0.50	-0.1
3,433,388	-		CCNA_03263	0.51	-0.3
3,433,445	+		CCNA_03263	0.53	-1.1
3,433,451	+		CCNA_03263	0.53	+3.1
3,433,453	-		CCNA_03263	0.53	+1.1
3,433,491	-		CCNA_03263	0.54	-0.1
3,433,496	-		CCNA_03263	0.54	-2.0
3,433,511	-		CCNA_03263	0.55	-0.8
3,433,512	-		CCNA_03263	0.55	-1.3
3,433,538	+		CCNA_03263	0.56	+1.3
3,433,558	-		CCNA_03263	0.57	-0.4
3,433,573	+		CCNA_03263	0.57	-0.9
3,433,573	+		CCNA_03263	0.57	+1.5
3,433,581	-		CCNA_03263	0.57	-0.4
3,433,656	-		CCNA_03263	0.60	+0.8
3,433,664	+		CCNA_03263	0.60	+0.6
3,433,669	+		CCNA_03263	0.61	-1.4
3,433,669	+		CCNA_03263	0.61	+0.5
3,433,739	-		CCNA_03263	0.63	-2.5
3,433,739	-		CCNA_03263	0.63	-1.1
3,433,739	-		CCNA_03263	0.63	-1.9
3,433,746	+		CCNA_03263	0.63	-0.7
3,433,752	+		CCNA_03263	0.64	-1.2
3,433,754	-		CCNA_03263	0.64	-0.3
3,433,757	+		CCNA_03263	0.64	+0.4
3,433,757	+		CCNA_03263	0.64	-2.0
3,433,757	+		CCNA_03263	0.64	-1.7
3,433,757	+		CCNA_03263	0.64	-1.9
3,433,760	-		CCNA_03263	0.64	+0.1
3,433,765	-		CCNA_03263	0.64	-1.2
3,433,765	-		CCNA_03263	0.64	-0.0
3,433,765	-		CCNA_03263	0.64	-1.6
3,433,771	+		CCNA_03263	0.64	+0.3
3,433,778	+		CCNA_03263	0.64	-1.1
3,433,779	-		CCNA_03263	0.64	+0.0
3,433,779	-		CCNA_03263	0.64	+0.1
3,433,779	-		CCNA_03263	0.64	+0.0
3,433,786	-		CCNA_03263	0.65	+0.8
3,433,817	-		CCNA_03263	0.66	+0.6
3,433,878	+		CCNA_03263	0.68	-0.5
3,433,962	+		CCNA_03263	0.71	+0.1
3,433,996	+		CCNA_03263	0.72	-1.2
3,434,004	+		CCNA_03263	0.72	-1.6
3,434,004	+		CCNA_03263	0.72	-0.1
3,434,012	-		CCNA_03263	0.73	-0.2
3,434,012	-		CCNA_03263	0.73	+0.9
3,434,012	-		CCNA_03263	0.73	-1.2
3,434,012	-		CCNA_03263	0.73	-1.0
3,434,016	+		CCNA_03263	0.73	+0.1
3,434,021	+		CCNA_03263	0.73	-0.6
3,434,122	+		CCNA_03263	0.77	+0.1
3,434,123	-		CCNA_03263	0.77	-1.4
3,434,123	-		CCNA_03263	0.77	-1.2
3,434,128	-		CCNA_03263	0.77	-0.9
3,434,149	-		CCNA_03263	0.78	+0.6
3,434,153	+		CCNA_03263	0.78	-0.1
3,434,153	+		CCNA_03263	0.78	-0.1
3,434,153	+		CCNA_03263	0.78	-1.4
3,434,153	+		CCNA_03263	0.78	-1.8
3,434,153	+		CCNA_03263	0.78	-0.6
3,434,153	+		CCNA_03263	0.78	-1.0
3,434,153	+		CCNA_03263	0.78	+0.5
3,434,153	+		CCNA_03263	0.78	-1.4
3,434,153	+		CCNA_03263	0.78	-0.4
3,434,153	+		CCNA_03263	0.78	-1.8
3,434,153	+		CCNA_03263	0.78	-2.1
3,434,153	+		CCNA_03263	0.78	+0.8
3,434,153	+		CCNA_03263	0.78	+0.6
3,434,161	-		CCNA_03263	0.78	-0.1
3,434,161	-		CCNA_03263	0.78	+1.2
3,434,161	-		CCNA_03263	0.78	-1.8
3,434,161	-		CCNA_03263	0.78	-1.8
3,434,196	+		CCNA_03263	0.79	-0.1
3,434,255	-		CCNA_03263	0.81	+1.3
3,434,255	-		CCNA_03263	0.81	-1.1
3,434,255	-		CCNA_03263	0.81	+0.8
3,434,346	+		CCNA_03263	0.85	-0.5
3,434,366	+		CCNA_03263	0.85	+0.4
3,434,366	+		CCNA_03263	0.85	-2.9
3,434,366	+		CCNA_03263	0.85	-0.1
3,434,374	-		CCNA_03263	0.86	-0.8
3,434,374	-		CCNA_03263	0.86	-0.0
3,434,374	-		CCNA_03263	0.86	-0.7
3,434,374	-		CCNA_03263	0.86	-0.5
3,434,430	+		CCNA_03263	0.88	-0.6
3,434,430	+		CCNA_03263	0.88	+0.1
3,434,452	-		CCNA_03263	0.88	-0.1
3,434,453	-		CCNA_03263	0.88	-0.8
3,434,469	+		CCNA_03263	0.89	-1.7
3,434,469	+		CCNA_03263	0.89	-0.5
3,434,471	+		CCNA_03263	0.89	-0.7
3,434,476	+		CCNA_03263	0.89	-1.7
3,434,476	+		CCNA_03263	0.89	-0.4
3,434,476	+		CCNA_03263	0.89	-0.1
3,434,479	-		CCNA_03263	0.89	-2.0
3,434,494	-		CCNA_03263	0.90	-0.4
3,434,494	-		CCNA_03263	0.90	+0.1
3,434,505	+				-0.1
3,434,540	+				-1.4
3,434,548	-				-0.4
3,434,550	+				-0.3
3,434,573	+				-0.3
3,434,579	+				-0.8
3,434,596	+				-0.9
3,434,685	+				+0.2
3,434,686	-				-0.7
3,434,694	+				+0.4
3,434,702	-				-0.9
3,434,712	-				+0.5
3,434,712	-				-0.2
3,434,737	+				+0.7
3,434,750	-				-0.2
3,434,779	+				-1.1
3,434,779	+				-0.2
3,434,779	+				-2.5
3,434,866	-				+0.1
3,434,866	-				-0.0
3,434,898	-				+1.5
3,434,929	+				+1.5
3,434,929	+				+0.4
3,434,935	+				+0.5
3,434,942	+				+0.2
3,434,981	-				-0.2
3,435,006	+				-0.5
3,435,012	+				+0.8
3,435,014	-				+0.3
3,435,076	-				-0.2
3,435,083	+				+0.4
3,435,083	+				+0.9
3,435,083	+				+2.3
3,435,115	-		CCNA_03265	0.11	-1.2
3,435,116	+		CCNA_03265	0.11	+0.5
3,435,117	+		CCNA_03265	0.11	+0.3
3,435,124	-		CCNA_03265	0.11	-0.3
3,435,140	+		CCNA_03265	0.12	+1.1
3,435,160	-		CCNA_03265	0.13	-1.0
3,435,189	-		CCNA_03265	0.15	+0.7
3,435,214	-		CCNA_03265	0.17	+0.7
3,435,216	-		CCNA_03265	0.17	+0.8
3,435,216	-		CCNA_03265	0.17	-0.7
3,435,216	-		CCNA_03265	0.17	-0.0
3,435,279	+		CCNA_03265	0.21	+0.6
3,435,289	+		CCNA_03265	0.22	+1.2
3,435,302	-		CCNA_03265	0.23	-0.4
3,435,317	-		CCNA_03265	0.24	-1.3
3,435,394	+		CCNA_03265	0.29	+1.7
3,435,412	-		CCNA_03265	0.30	-1.0
3,435,412	-		CCNA_03265	0.30	+0.3
3,435,435	+		CCNA_03265	0.31	+0.8
3,435,448	-		CCNA_03265	0.32	+0.1
3,435,449	+		CCNA_03265	0.32	+0.8
3,435,470	+		CCNA_03265	0.34	+2.0
3,435,478	-		CCNA_03265	0.34	-0.6
3,435,478	-		CCNA_03265	0.34	-1.4
3,435,478	-		CCNA_03265	0.34	-2.2
3,435,504	+		CCNA_03265	0.36	+1.1
3,435,515	+		CCNA_03265	0.37	+1.2
3,435,563	-		CCNA_03265	0.40	+0.6
3,435,565	+		CCNA_03265	0.40	+0.9
3,435,607	+		CCNA_03265	0.43	+0.4
3,435,622	+		CCNA_03265	0.44	+1.6
3,435,653	-		CCNA_03265	0.46	-0.1
3,435,712	+		CCNA_03265	0.49	+0.4
3,435,760	+		CCNA_03265	0.53	+0.8
3,435,760	+		CCNA_03265	0.53	+2.0
3,435,771	+		CCNA_03265	0.53	+1.7