Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01714

Experiment: PYE with Nalidixic 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.03 mg/ml
1,844,472	-				+1.7
1,844,473	-		CCNA_01712	0.59	+3.1
1,844,473	-		CCNA_01712	0.59	+3.5
1,844,487	-		CCNA_01712	0.63	+2.9
1,844,508	-		CCNA_01712	0.68	+3.0
1,844,520	-		CCNA_01712	0.72	+3.0
1,844,520	-		CCNA_01712	0.72	+3.1
1,844,520	-		CCNA_01712	0.72	+2.9
1,844,561	-		CCNA_01712	0.82	+2.8
1,844,575	-		CCNA_01712	0.86	+2.9
1,844,575	-		CCNA_01712	0.86	+2.9
1,844,575	-		CCNA_01712	0.86	+2.7
1,844,618	-				+2.5
1,844,621	+				+0.8
1,844,621	+				+0.3
1,844,699	+				+0.4
1,844,722	+				+0.2
1,844,762	+				-0.3
1,844,762	+				-0.2
1,844,762	+				-0.0
1,844,768	+				+0.4
1,844,768	+				+0.2
1,844,768	+				-0.1
1,844,770	-				-0.5
1,844,776	-				-0.3
1,844,823	+		CCNA_01713	0.12	-0.0
1,844,828	+		CCNA_01713	0.13	+1.0
1,844,845	+		CCNA_01713	0.16	+0.8
1,844,853	-		CCNA_01713	0.17	-0.2
1,844,908	+		CCNA_01713	0.27	-0.2
1,844,932	+		CCNA_01713	0.31	+0.7
1,844,935	-		CCNA_01713	0.32	+1.1
1,844,962	-		CCNA_01713	0.36	-0.9
1,844,962	-		CCNA_01713	0.36	+0.1
1,844,962	-		CCNA_01713	0.36	+1.0
1,845,020	-		CCNA_01713	0.46	-0.2
1,845,031	+		CCNA_01713	0.48	-0.1
1,845,062	+		CCNA_01713	0.54	+0.0
1,845,083	-		CCNA_01713	0.57	-1.1
1,845,101	+		CCNA_01713	0.60	-0.9
1,845,136	+		CCNA_01713	0.66	+2.9
1,845,167	-		CCNA_01713	0.72	+0.7
1,845,167	-		CCNA_01713	0.72	+1.5
1,845,176	+		CCNA_01713	0.73	+0.9
1,845,177	-		CCNA_01713	0.73	+0.2
1,845,186	+		CCNA_01713	0.75	+1.3
1,845,191	+		CCNA_01713	0.76	-0.8
1,845,196	-		CCNA_01713	0.77	-0.9
1,845,201	-		CCNA_01713	0.78	+1.1
1,845,223	+		CCNA_01713	0.81	+0.9
1,845,226	-		CCNA_01713	0.82	+0.4
1,845,245	+				+1.1
1,845,260	+				-1.7
1,845,260	+				-0.2
1,845,260	+				-1.0
1,845,268	-				+0.5
1,845,268	-				-1.8
1,845,268	-				+0.8
1,845,268	-				-0.5
1,845,273	-				+1.2
1,845,299	+				-0.9
1,845,314	+				-0.5
1,845,319	+				+0.0
1,845,319	+				+0.3
1,845,325	+				-0.3
1,845,327	-				-0.8
1,845,345	+		CCNA_03956	0.55	+0.1
1,845,349	+		CCNA_03956	0.58	+0.7
1,845,362	+		CCNA_03956	0.65	+2.5
1,845,396	+				+1.5
1,845,430	+				+0.2
1,845,430	+				-0.4
1,845,430	+				+0.7
1,845,430	+				-0.8
1,845,430	+				+1.2
1,845,430	-				-1.0
1,845,438	-				+1.0
1,845,503	+		CCNA_01714	0.22	+2.4
1,845,503	+		CCNA_01714	0.22	+0.5
1,845,503	+		CCNA_01714	0.22	-1.3
1,845,511	-		CCNA_01714	0.24	-1.2
1,845,511	-		CCNA_01714	0.24	+0.3
1,845,521	+		CCNA_01714	0.27	+0.5
1,845,529	-		CCNA_01714	0.30	-0.5
1,845,557	+		CCNA_01714	0.38	+1.7
1,845,562	+		CCNA_01714	0.39	+2.2
1,845,562	+		CCNA_01714	0.39	+1.7
1,845,577	+		CCNA_01714	0.43	+0.5
1,845,577	+		CCNA_01714	0.43	+1.4
1,845,623	+		CCNA_01714	0.57	+2.0
1,845,705	+		CCNA_01714	0.80	-0.8
1,845,705	+		CCNA_01714	0.80	-0.9
1,845,706	+		CCNA_01714	0.80	+1.3
1,845,706	+		CCNA_01714	0.80	+0.2
1,845,706	+		CCNA_01714	0.80	-1.2
1,845,706	+		CCNA_01714	0.80	+1.2
1,845,706	+		CCNA_01714	0.80	+1.1
1,845,713	-		CCNA_01714	0.82	-0.0
1,845,713	-		CCNA_01714	0.82	-1.4
1,845,714	-		CCNA_01714	0.83	-1.7
1,845,782	+				+0.2
1,845,841	+				+0.9
1,845,853	+				+0.6
1,845,874	+				+0.9
1,845,882	-				+0.2
1,845,900	+				+0.2
1,845,934	+				+0.3
1,845,977	-		CCNA_01715	0.14	+0.9
1,846,069	+		CCNA_01715	0.28	+0.1
1,846,077	-		CCNA_01715	0.29	+0.0
1,846,077	-		CCNA_01715	0.29	-0.5
1,846,141	-		CCNA_01715	0.38	-0.3
1,846,158	+		CCNA_01715	0.41	+0.1
1,846,166	+		CCNA_01715	0.42	-1.3
1,846,187	+		CCNA_01715	0.45	+0.7
1,846,267	+		CCNA_01715	0.56	-0.5
1,846,299	-		CCNA_01715	0.61	-0.4
1,846,300	-		CCNA_01715	0.61	-0.4
1,846,316	+		CCNA_01715	0.64	+2.5
1,846,343	+		CCNA_01715	0.68	-1.2
1,846,426	+		CCNA_01715	0.80	+0.6
1,846,715	+		CCNA_01716	0.61	+0.9
1,846,723	-		CCNA_01716	0.65	-0.1