Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01270

Experiment: PYE with Nalidixic 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.03 mg/ml
1,397,208	+		CCNA_01268	0.87	-0.8
1,397,208	+		CCNA_01268	0.87	-2.1
1,397,216	-		CCNA_01268	0.89	+0.7
1,397,218	+		CCNA_01268	0.89	-0.2
1,397,256	+				+0.8
1,397,276	-				+1.8
1,397,276	-				-0.8
1,397,300	+				-0.0
1,397,330	-				-0.6
1,397,390	+				-1.2
1,397,398	-				-0.3
1,397,398	-				-1.5
1,397,398	-				-0.4
1,397,398	-				-0.3
1,397,398	-				+1.3
1,397,398	-				-1.2
1,397,458	+				-0.2
1,397,525	+				-0.3
1,397,533	-				-0.8
1,397,535	+				-1.9
1,397,536	+				+0.0
1,397,543	-				+2.0
1,397,557	-				-1.6
1,397,593	+				-0.3
1,397,602	-				+1.9
1,397,605	+		CCNA_01269	0.11	+0.1
1,397,660	-		CCNA_01269	0.21	-0.4
1,397,688	-		CCNA_01269	0.27	-0.8
1,397,716	+		CCNA_01269	0.33	-2.0
1,397,795	-		CCNA_01269	0.48	-0.3
1,397,817	-		CCNA_01269	0.53	-0.3
1,397,817	-		CCNA_01269	0.53	-2.4
1,397,841	+		CCNA_01269	0.57	-0.1
1,397,841	+		CCNA_01269	0.57	-0.1
1,397,841	+		CCNA_01269	0.57	+0.8
1,397,849	-		CCNA_01269	0.59	-3.1
1,397,849	-		CCNA_01269	0.59	-1.3
1,397,849	-		CCNA_01269	0.59	-1.0
1,397,854	-		CCNA_01269	0.60	-2.0
1,397,860	+		CCNA_01269	0.61	-2.1
1,397,868	-		CCNA_01269	0.63	-0.4
1,397,931	-		CCNA_01269	0.75	-0.0
1,397,951	-		CCNA_01269	0.79	+1.4
1,397,982	+		CCNA_01269	0.85	+1.6
1,398,008	+				-0.0
1,398,030	+				+0.1
1,398,040	+				+0.1
1,398,059	+				-1.6
1,398,060	+				-1.1
1,398,060	+				-0.8
1,398,060	+				-1.6
1,398,066	+				-0.4
1,398,097	+				+2.8
1,398,105	-				-0.5
1,398,124	-				+0.1
1,398,200	+		CCNA_01270	0.42	+1.3
1,398,208	-		CCNA_01270	0.46	+1.5
1,398,208	-		CCNA_01270	0.46	-0.3
1,398,240	+		CCNA_01270	0.61	+0.7
1,398,254	-		CCNA_01270	0.68	+0.7
1,398,293	+		CCNA_01270	0.86	+0.8
1,398,293	+		CCNA_01270	0.86	+1.5
1,398,360	-				-1.1
1,398,361	+				-0.1
1,398,369	-				-1.0
1,398,384	-				-0.9
1,398,424	+				-0.9
1,398,424	+				-0.3
1,398,432	-				+0.8
1,398,432	-				+0.2
1,398,469	+				+1.0
1,398,483	+				+0.2
1,398,506	+				+0.4
1,398,506	+				-1.8
1,398,506	+				+0.7
1,398,506	+				-0.3
1,398,506	-				+0.0
1,398,523	+				+1.8
1,398,536	+		CCNA_01271	0.12	+0.6
1,398,558	+		CCNA_01271	0.16	+2.4
1,398,702	+		CCNA_01271	0.43	+0.7
1,398,707	+		CCNA_01271	0.44	-0.5
1,398,707	+		CCNA_01271	0.44	+1.3
1,398,707	+		CCNA_01271	0.44	-0.8
1,398,707	+		CCNA_01271	0.44	+0.4
1,398,707	+		CCNA_01271	0.44	-0.5
1,398,707	+		CCNA_01271	0.44	-2.7
1,398,707	+		CCNA_01271	0.44	-0.1
1,398,707	+		CCNA_01271	0.44	-2.1
1,398,707	+		CCNA_01271	0.44	-0.2
1,398,707	+		CCNA_01271	0.44	-0.0
1,398,710	-		CCNA_01271	0.45	-1.8
1,398,715	-		CCNA_01271	0.46	-1.2
1,398,715	-		CCNA_01271	0.46	-1.8
1,398,715	-		CCNA_01271	0.46	+0.0
1,398,715	-		CCNA_01271	0.46	-0.7
1,398,715	-		CCNA_01271	0.46	-0.5
1,398,715	-		CCNA_01271	0.46	+0.0
1,398,715	-		CCNA_01271	0.46	-1.6
1,398,715	-		CCNA_01271	0.46	+1.2
1,398,818	+		CCNA_01271	0.65	-0.9
1,398,826	-		CCNA_01271	0.67	+0.8
1,398,862	+		CCNA_01271	0.73	-0.2
1,398,882	-		CCNA_01271	0.77	+0.5
1,398,903	+		CCNA_01271	0.81	+0.7
1,398,928	-				+3.6
1,399,005	-				-1.3
1,399,005	-				-1.5
1,399,042	+				+0.5
1,399,050	-				+0.2
1,399,063	+		CCNA_01272	0.12	-0.3
1,399,120	+		CCNA_01272	0.25	+1.9
1,399,120	+		CCNA_01272	0.25	+1.3
1,399,120	+		CCNA_01272	0.25	+2.2
1,399,164	+		CCNA_01272	0.35	+0.3
1,399,223	-		CCNA_01272	0.49	-1.1
1,399,225	+		CCNA_01272	0.50	-1.3
1,399,230	+		CCNA_01272	0.51	+1.8
1,399,238	-				+5.2
1,399,238	-		CCNA_01272	0.53	+0.1
1,399,254	-		CCNA_01272	0.56	+0.5
1,399,269	+		CCNA_01272	0.60	+0.8
1,399,307	+				+1.2