Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00991

Experiment: PYE with Nalidixic 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.03 mg/ml
1,071,115	+		CCNA_00989	0.77	+0.3
1,071,120	+		CCNA_00989	0.77	-0.5
1,071,120	+		CCNA_00989	0.77	-0.7
1,071,120	+		CCNA_00989	0.77	-0.3
1,071,120	+		CCNA_00989	0.77	+1.5
1,071,120	+		CCNA_00989	0.77	-0.8
1,071,120	+		CCNA_00989	0.77	-1.7
1,071,121	+		CCNA_00989	0.77	+0.8
1,071,123	-		CCNA_00989	0.77	-0.1
1,071,128	-		CCNA_00989	0.77	-2.7
1,071,129	-		CCNA_00989	0.77	-0.2
1,071,141	+		CCNA_00989	0.78	+0.7
1,071,141	+		CCNA_00989	0.78	-2.1
1,071,178	+		CCNA_00989	0.80	-2.8
1,071,205	+		CCNA_00989	0.81	-0.5
1,071,253	+		CCNA_00989	0.84	+0.5
1,071,253	+		CCNA_00989	0.84	-0.8
1,071,253	+		CCNA_00989	0.84	+0.7
1,071,253	+		CCNA_00989	0.84	+0.3
1,071,253	+		CCNA_00989	0.84	-0.9
1,071,253	+		CCNA_00989	0.84	+1.3
1,071,253	+		CCNA_00989	0.84	-1.1
1,071,261	-		CCNA_00989	0.84	-0.4
1,071,261	-		CCNA_00989	0.84	-0.2
1,071,261	-		CCNA_00989	0.84	-2.2
1,071,261	-		CCNA_00989	0.84	-1.3
1,071,261	-		CCNA_00989	0.84	-1.6
1,071,317	-		CCNA_00989	0.87	-2.3
1,071,341	-		CCNA_00989	0.89	+0.4
1,071,348	+		CCNA_00989	0.89	-1.8
1,071,355	-		CCNA_00989	0.89	-1.5
1,071,366	+		CCNA_00989	0.90	+0.7
1,071,471	+				+1.2
1,071,499	+				+1.5
1,071,514	+				+1.7
1,071,514	+				+1.0
1,071,519	+				+0.1
1,071,522	-				+0.0
1,071,561	-				-2.7
1,071,561	-				-0.7
1,071,561	-				-1.4
1,071,572	+				-1.3
1,071,580	+				+0.5
1,071,580	-				+0.8
1,071,580	-				+0.1
1,071,588	-				+0.0
1,071,590	+				+1.3
1,071,621	-				-0.2
1,071,640	+		CCNA_00990	0.12	-1.5
1,071,648	-		CCNA_00990	0.14	-0.2
1,071,658	+		CCNA_00990	0.16	-1.0
1,071,663	+		CCNA_00990	0.17	-2.2
1,071,684	-		CCNA_00990	0.22	-0.0
1,071,741	+		CCNA_00990	0.34	-1.9
1,071,743	-		CCNA_00990	0.34	+0.8
1,071,760	+		CCNA_00990	0.38	-0.5
1,071,762	-		CCNA_00990	0.38	-0.4
1,071,767	-		CCNA_00990	0.39	+0.2
1,071,774	-		CCNA_00990	0.41	+0.3
1,071,774	-		CCNA_00990	0.41	-0.7
1,071,851	+		CCNA_00990	0.57	-3.3
1,071,880	+		CCNA_00990	0.63	-1.6
1,071,885	+		CCNA_00990	0.64	-1.5
1,071,885	+		CCNA_00990	0.64	+1.5
1,071,888	-		CCNA_00990	0.65	-2.1
1,071,890	+		CCNA_00990	0.65	-2.1
1,071,893	-		CCNA_00990	0.66	-1.3
1,071,931	+		CCNA_00990	0.74	-2.2
1,071,935	-		CCNA_00990	0.75	-2.1
1,071,935	-		CCNA_00990	0.75	-1.6
1,071,958	+		CCNA_00990	0.80	-0.7
1,072,001	-		CCNA_00990	0.89	+1.0
1,072,002	-		CCNA_00990	0.89	+0.5
1,072,019	+				+0.3
1,072,025	+				-2.1
1,072,025	+				-0.8
1,072,029	+				-0.9
1,072,043	-				-1.0
1,072,069	-				+0.2
1,072,069	-				+0.8
1,072,069	-				+0.7
1,072,069	-				-0.6
1,072,069	-				-0.0
1,072,069	-				+0.3
1,072,069	-				-0.8
1,072,092	-				+3.7
1,072,107	+				-0.3
1,072,107	+				-0.7
1,072,115	-				-0.3
1,072,115	-				+0.8
1,072,125	-				+1.8
1,072,125	-				+0.6
1,072,125	-				-0.7
1,072,143	-				+1.0
1,072,143	-				+0.5
1,072,150	+				-0.9
1,072,158	-				-1.4
1,072,198	-		CCNA_00991	0.19	+0.8
1,072,226	-		CCNA_00991	0.25	-0.4
1,072,267	+		CCNA_00991	0.34	-0.3
1,072,267	+		CCNA_00991	0.34	-0.6
1,072,275	-		CCNA_00991	0.36	-0.5
1,072,275	-		CCNA_00991	0.36	+0.6
1,072,275	-		CCNA_00991	0.36	+0.2
1,072,287	-		CCNA_00991	0.39	-2.1
1,072,310	-		CCNA_00991	0.44	-0.6
1,072,315	+		CCNA_00991	0.45	-1.1
1,072,322	+		CCNA_00991	0.47	-0.8
1,072,329	+		CCNA_00991	0.48	-0.1
1,072,337	-		CCNA_00991	0.50	-0.4
1,072,341	-		CCNA_00991	0.51	-0.6
1,072,369	+		CCNA_00991	0.57	+0.2
1,072,376	-		CCNA_00991	0.59	-0.8
1,072,376	-		CCNA_00991	0.59	-0.2
1,072,377	-		CCNA_00991	0.59	-1.5
1,072,381	-		CCNA_00991	0.60	+0.1
1,072,417	+		CCNA_00991	0.68	+0.8
1,072,467	+		CCNA_00991	0.79	-1.1
1,072,475	-		CCNA_00991	0.81	-0.7
1,072,477	+		CCNA_00991	0.81	+0.5
1,072,477	+		CCNA_00991	0.81	+0.7
1,072,540	+				+1.6
1,072,554	-				+0.8
1,072,631	+				+0.7
1,072,650	+				+0.4
1,072,658	-				+1.1
1,072,668	-				+1.4
1,072,671	-				+0.9
1,072,676	+				-1.9
1,072,676	+				-0.7
1,072,676	+				-0.8
1,072,684	-				+2.1
1,072,689	+				-0.9
1,072,697	-				+1.4
1,072,697	-				+2.0
1,072,697	-				+1.9
1,072,699	+				+0.1
1,072,707	-				+2.0
1,072,726	-				+2.1
1,072,727	-		CCNA_00992	0.10	+2.0
1,072,735	+				+1.5
1,072,737	+		CCNA_00992	0.11	+0.5
1,072,743	-		CCNA_00992	0.12	+1.9
1,072,769	-		CCNA_00992	0.14	+1.7
1,072,773	+		CCNA_00992	0.15	+0.7
1,072,783	+		CCNA_00992	0.16	-1.1
1,072,801	+		CCNA_00992	0.17	+1.8
1,072,824	-		CCNA_00992	0.20	+2.2
1,072,824	-		CCNA_00992	0.20	+1.1
1,072,824	-		CCNA_00992	0.20	+0.6
1,072,824	-		CCNA_00992	0.20	+1.7
1,072,824	-		CCNA_00992	0.20	+0.8
1,072,854	-		CCNA_00992	0.23	+1.4
1,072,885	-		CCNA_00992	0.26	+2.2
1,072,885	-		CCNA_00992	0.26	+1.1
1,072,895	+		CCNA_00992	0.27	+0.3
1,072,903	-		CCNA_00992	0.27	+1.4
1,072,915	-		CCNA_00992	0.29	+1.5
1,072,915	-		CCNA_00992	0.29	+1.9
1,072,964	+		CCNA_00992	0.33	+0.5
1,072,964	+		CCNA_00992	0.33	+0.5
1,072,964	+		CCNA_00992	0.33	+1.1
1,072,964	+		CCNA_00992	0.33	-1.5
1,072,964	+		CCNA_00992	0.33	-0.6
1,072,972	-		CCNA_00992	0.34	+1.4
1,073,036	+		CCNA_00992	0.41	-2.1
1,073,036	+		CCNA_00992	0.41	-1.0
1,073,036	+		CCNA_00992	0.41	-0.7
1,073,044	-		CCNA_00992	0.41	+1.8
1,073,055	+		CCNA_00992	0.42	+0.1
1,073,055	+		CCNA_00992	0.42	-1.1
1,073,055	+		CCNA_00992	0.42	-2.3
1,073,055	+		CCNA_00992	0.42	-1.5
1,073,063	-		CCNA_00992	0.43	+1.3
1,073,063	-		CCNA_00992	0.43	+1.4
1,073,063	-		CCNA_00992	0.43	+1.5
1,073,071	-		CCNA_00992	0.44	+1.7
1,073,078	-		CCNA_00992	0.45	+0.3
1,073,084	-		CCNA_00992	0.45	+1.3
1,073,106	+		CCNA_00992	0.47	-1.7
1,073,126	-		CCNA_00992	0.49	+1.5
1,073,134	+		CCNA_00992	0.50	-1.9
1,073,137	-		CCNA_00992	0.50	+1.3
1,073,137	-		CCNA_00992	0.50	+1.8
1,073,155	-		CCNA_00992	0.52	+1.0
1,073,171	+		CCNA_00992	0.54	-1.5
1,073,171	+		CCNA_00992	0.54	+1.1
1,073,179	-		CCNA_00992	0.55	+1.3
1,073,179	-		CCNA_00992	0.55	+1.7
1,073,179	-		CCNA_00992	0.55	+1.3
1,073,179	-		CCNA_00992	0.55	+1.5
1,073,181	+		CCNA_00992	0.55	-1.3
1,073,203	-		CCNA_00992	0.57	+1.1
1,073,205	+		CCNA_00992	0.57	-0.5
1,073,205	+		CCNA_00992	0.57	-0.3
1,073,205	+		CCNA_00992	0.57	-0.7
1,073,208	-		CCNA_00992	0.57	+1.2
1,073,213	+		CCNA_00992	0.58	+0.1
1,073,213	-		CCNA_00992	0.58	+1.7
1,073,213	-				+1.1
1,073,213	-		CCNA_00992	0.58	+1.7
1,073,221	-		CCNA_00992	0.59	+1.8
1,073,221	-		CCNA_00992	0.59	+1.1
1,073,221	-		CCNA_00992	0.59	+1.6
1,073,251	-		CCNA_00992	0.62	+1.8
1,073,259	+		CCNA_00992	0.63	+1.3
1,073,262	-		CCNA_00992	0.63	+1.9
1,073,267	-		CCNA_00992	0.63	+1.1
1,073,347	-		CCNA_00992	0.71	+0.8
1,073,377	-		CCNA_00992	0.74	+1.7
1,073,407	-		CCNA_00992	0.77	+1.8
1,073,454	+		CCNA_00992	0.82	-1.7
1,073,498	-		CCNA_00992	0.86	+1.6
1,073,521	-		CCNA_00992	0.88	+0.9
1,073,521	-		CCNA_00992	0.88	+1.9
1,073,523	-		CCNA_00992	0.89	+1.1