Experiment: PYE with Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00683 and CCNA_00684 are separated by 12 nucleotides CCNA_00684 and CCNA_00685 overlap by 4 nucleotides CCNA_00685 and CCNA_00686 are separated by 171 nucleotides
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
CCNA_00684: CCNA_00684 - anti-sigma factor, ChrR-family, at 740,473 to 741,111
_00684
CCNA_00685: CCNA_00685 - RNA polymerase sigma factor, at 741,108 to 741,725
_00685
CCNA_00686: CCNA_00686 - peptidase family S41 protein, at 741,897 to 743,330
_00686
Position (kb) 741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 740.111 kb on + strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.119 kb on - strand, within CCNA_00683 at 740.119 kb on - strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.126 kb on - strand, within CCNA_00683 at 740.157 kb on + strand, within CCNA_00683 at 740.228 kb on + strand, within CCNA_00683 at 740.248 kb on - strand, within CCNA_00683 at 740.248 kb on - strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.261 kb on - strand, within CCNA_00683 at 740.308 kb on - strand at 740.308 kb on - strand at 740.339 kb on - strand at 740.345 kb on + strand at 740.356 kb on + strand at 740.364 kb on - strand at 740.364 kb on - strand at 740.373 kb on + strand at 740.393 kb on + strand at 740.406 kb on - strand at 740.424 kb on - strand at 740.436 kb on + strand at 740.444 kb on - strand at 740.444 kb on - strand at 740.448 kb on + strand at 740.458 kb on - strand at 740.468 kb on - strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.527 kb on - strand at 740.541 kb on - strand, within CCNA_00684 at 740.546 kb on - strand, within CCNA_00684 at 741.113 kb on - strand at 741.113 kb on - strand at 741.126 kb on - strand at 741.127 kb on - strand at 741.134 kb on + strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.192 kb on + strand, within CCNA_00685 at 741.233 kb on - strand, within CCNA_00685 at 741.245 kb on - strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.271 kb on + strand, within CCNA_00685 at 741.274 kb on - strand, within CCNA_00685 at 741.286 kb on - strand, within CCNA_00685 at 741.307 kb on - strand, within CCNA_00685 at 741.345 kb on - strand, within CCNA_00685 at 741.358 kb on - strand, within CCNA_00685 at 741.370 kb on - strand, within CCNA_00685 at 741.371 kb on - strand, within CCNA_00685 at 741.376 kb on + strand, within CCNA_00685 at 741.383 kb on + strand, within CCNA_00685 at 741.399 kb on - strand, within CCNA_00685 at 741.438 kb on + strand, within CCNA_00685 at 741.438 kb on + strand, within CCNA_00685 at 741.552 kb on + strand, within CCNA_00685 at 741.575 kb on + strand, within CCNA_00685 at 741.583 kb on - strand, within CCNA_00685 at 741.593 kb on + strand, within CCNA_00685 at 741.612 kb on + strand, within CCNA_00685 at 741.649 kb on + strand, within CCNA_00685 at 741.659 kb on + strand, within CCNA_00685 at 741.662 kb on - strand, within CCNA_00685 at 741.662 kb on - strand, within CCNA_00685 at 741.672 kb on - strand at 741.674 kb on - strand at 741.710 kb on - strand at 741.727 kb on + strand at 741.735 kb on - strand at 741.742 kb on - strand at 741.802 kb on - strand at 741.818 kb on + strand at 741.819 kb on + strand at 741.825 kb on + strand at 741.825 kb on + strand at 741.840 kb on - strand at 741.883 kb on + strand at 741.896 kb on - strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.986 kb on + strand at 741.986 kb on + strand at 742.013 kb on + strand at 742.025 kb on + strand at 742.030 kb on + strand at 742.041 kb on + strand, within CCNA_00686 at 742.045 kb on + strand, within CCNA_00686 at 742.046 kb on + strand, within CCNA_00686 at 742.061 kb on + strand at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.085 kb on + strand, within CCNA_00686 at 742.093 kb on - strand, within CCNA_00686 at 742.108 kb on + strand, within CCNA_00686 at 742.108 kb on + strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.123 kb on + strand, within CCNA_00686 at 742.125 kb on - strand, within CCNA_00686 at 742.126 kb on - strand, within CCNA_00686 at 742.131 kb on - strand, within CCNA_00686 at 742.150 kb on - strand, within CCNA_00686 at 742.150 kb on - strand, within CCNA_00686 at 742.212 kb on + strand, within CCNA_00686 at 742.222 kb on - strand, within CCNA_00686 at 742.252 kb on + strand, within CCNA_00686 at 742.257 kb on + strand, within CCNA_00686 at 742.272 kb on - strand, within CCNA_00686 at 742.291 kb on + strand, within CCNA_00686 at 742.291 kb on + strand, within CCNA_00686 at 742.299 kb on - strand, within CCNA_00686 at 742.328 kb on + strand, within CCNA_00686 at 742.333 kb on - strand, within CCNA_00686 at 742.351 kb on + strand, within CCNA_00686 at 742.359 kb on + strand, within CCNA_00686 at 742.364 kb on + strand, within CCNA_00686 at 742.369 kb on + strand at 742.411 kb on - strand, within CCNA_00686 at 742.417 kb on + strand, within CCNA_00686 at 742.418 kb on - strand, within CCNA_00686 at 742.457 kb on + strand, within CCNA_00686 at 742.502 kb on + strand, within CCNA_00686 at 742.552 kb on + strand, within CCNA_00686 at 742.560 kb on - strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.617 kb on + strand, within CCNA_00686 at 742.618 kb on - strand, within CCNA_00686 at 742.618 kb on - strand, within CCNA_00686 at 742.644 kb on + strand, within CCNA_00686 at 742.644 kb on + strand, within CCNA_00686 at 742.652 kb on - strand, within CCNA_00686 at 742.652 kb on - strand, within CCNA_00686 at 742.666 kb on - strand, within CCNA_00686 at 742.668 kb on - strand, within CCNA_00686 at 742.670 kb on + strand, within CCNA_00686
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.03 mg/ml remove 740,111 + CCNA_00683 0.77 -0.8 740,114 - CCNA_00683 0.77 -0.2 740,114 - CCNA_00683 0.77 +1.5 740,119 - CCNA_00683 0.78 +0.2 740,119 - CCNA_00683 0.78 -1.4 740,125 + CCNA_00683 0.78 +0.3 740,125 + CCNA_00683 0.78 -0.1 740,126 - CCNA_00683 0.78 +1.8 740,157 + CCNA_00683 0.80 -0.8 740,228 + CCNA_00683 0.85 -0.1 740,248 - CCNA_00683 0.86 -0.5 740,248 - CCNA_00683 0.86 -0.7 740,253 + CCNA_00683 0.86 +2.9 740,253 + CCNA_00683 0.86 +0.9 740,253 + CCNA_00683 0.86 -0.4 740,261 - CCNA_00683 0.87 +0.0 740,308 - +2.6 740,308 - -1.7 740,339 - -0.2 740,345 + -1.3 740,356 + -0.8 740,364 - -0.8 740,364 - +0.8 740,373 + -0.1 740,393 + +0.3 740,406 - +1.9 740,424 - +0.6 740,436 + -0.6 740,444 - +2.2 740,444 - +0.7 740,448 + -0.5 740,458 - -0.2 740,468 - +1.2 740,471 + -0.7 740,471 + -0.7 740,471 + +0.3 740,471 + -1.3 740,479 - +0.4 740,479 - +1.0 740,479 - -1.5 740,479 - +0.7 740,479 - +0.1 740,527 - +1.9 740,541 - CCNA_00684 0.11 +1.9 740,546 - CCNA_00684 0.11 +1.6 741,113 - +0.5 741,113 - +0.9 741,126 - +2.0 741,127 - +1.6 741,134 + +1.1 741,142 - +0.4 741,142 - +1.2 741,142 - +1.5 741,142 - +1.2 741,192 + CCNA_00685 0.14 -0.3 741,233 - CCNA_00685 0.20 -1.9 741,245 - CCNA_00685 0.22 -0.3 741,256 + CCNA_00685 0.24 +1.5 741,256 + CCNA_00685 0.24 -0.5 741,256 + CCNA_00685 0.24 +0.2 741,256 + CCNA_00685 0.24 -1.1 741,271 + CCNA_00685 0.26 +0.7 741,274 - CCNA_00685 0.27 -0.1 741,286 - CCNA_00685 0.29 -1.1 741,307 - CCNA_00685 0.32 -2.3 741,345 - CCNA_00685 0.38 -1.2 741,358 - CCNA_00685 0.40 -0.9 741,370 - CCNA_00685 0.42 +0.0 741,371 - CCNA_00685 0.43 +0.5 741,376 + CCNA_00685 0.43 -0.6 741,383 + CCNA_00685 0.44 +0.0 741,399 - CCNA_00685 0.47 +0.1 741,438 + CCNA_00685 0.53 -1.3 741,438 + CCNA_00685 0.53 -0.7 741,552 + CCNA_00685 0.72 -1.5 741,575 + CCNA_00685 0.76 -0.2 741,583 - CCNA_00685 0.77 -0.9 741,593 + CCNA_00685 0.78 +0.0 741,612 + CCNA_00685 0.82 -0.2 741,649 + CCNA_00685 0.88 -1.5 741,659 + CCNA_00685 0.89 -0.3 741,662 - CCNA_00685 0.90 +0.3 741,662 - CCNA_00685 0.90 +0.0 741,672 - -1.2 741,674 - -1.2 741,710 - -0.4 741,727 + +0.4 741,735 - -0.2 741,742 - -0.7 741,802 - +1.9 741,818 + -0.8 741,819 + +0.1 741,825 + +0.6 741,825 + -0.2 741,840 - -0.9 741,883 + +0.7 741,896 - +0.3 741,915 - -0.5 741,915 - -0.3 741,915 - -0.6 741,986 + -0.3 741,986 + +0.0 742,013 + +1.0 742,025 + +1.5 742,030 + +1.1 742,041 + CCNA_00686 0.10 -0.3 742,045 + CCNA_00686 0.10 -0.9 742,046 + CCNA_00686 0.10 -1.4 742,061 + +1.9 742,061 + CCNA_00686 0.11 +1.0 742,061 + CCNA_00686 0.11 -2.0 742,061 + CCNA_00686 0.11 -0.1 742,061 + CCNA_00686 0.11 -0.5 742,069 - CCNA_00686 0.12 -1.3 742,069 - CCNA_00686 0.12 +1.3 742,069 - CCNA_00686 0.12 +1.2 742,069 - CCNA_00686 0.12 +0.5 742,069 - CCNA_00686 0.12 -1.5 742,069 - CCNA_00686 0.12 -0.4 742,069 - CCNA_00686 0.12 -0.2 742,069 - CCNA_00686 0.12 -0.6 742,085 + CCNA_00686 0.13 +0.5 742,093 - CCNA_00686 0.14 +0.9 742,108 + CCNA_00686 0.15 -1.1 742,108 + CCNA_00686 0.15 +0.9 742,116 - CCNA_00686 0.15 -0.9 742,116 - CCNA_00686 0.15 +1.4 742,116 - CCNA_00686 0.15 +0.3 742,116 - CCNA_00686 0.15 -1.3 742,116 - CCNA_00686 0.15 +0.4 742,123 + CCNA_00686 0.16 +0.0 742,125 - CCNA_00686 0.16 +1.3 742,126 - CCNA_00686 0.16 -0.3 742,131 - CCNA_00686 0.16 -0.4 742,150 - CCNA_00686 0.18 -2.1 742,150 - CCNA_00686 0.18 +0.5 742,212 + CCNA_00686 0.22 -0.2 742,222 - CCNA_00686 0.23 -0.2 742,252 + CCNA_00686 0.25 -1.1 742,257 + CCNA_00686 0.25 +1.3 742,272 - CCNA_00686 0.26 +0.2 742,291 + CCNA_00686 0.27 +1.8 742,291 + CCNA_00686 0.27 -0.8 742,299 - CCNA_00686 0.28 -0.9 742,328 + CCNA_00686 0.30 -1.6 742,333 - CCNA_00686 0.30 -0.3 742,351 + CCNA_00686 0.32 -0.6 742,359 + CCNA_00686 0.32 +1.2 742,364 + CCNA_00686 0.33 -0.9 742,369 + +4.1 742,411 - CCNA_00686 0.36 +0.2 742,417 + CCNA_00686 0.36 -0.4 742,418 - CCNA_00686 0.36 -2.2 742,457 + CCNA_00686 0.39 -0.8 742,502 + CCNA_00686 0.42 -0.9 742,552 + CCNA_00686 0.46 -0.6 742,560 - CCNA_00686 0.46 -0.6 742,610 + CCNA_00686 0.50 -0.5 742,610 + CCNA_00686 0.50 -0.4 742,610 + CCNA_00686 0.50 -1.5 742,610 + CCNA_00686 0.50 +0.7 742,617 + CCNA_00686 0.50 -1.3 742,618 - CCNA_00686 0.50 +0.1 742,618 - CCNA_00686 0.50 +1.1 742,644 + CCNA_00686 0.52 -1.8 742,644 + CCNA_00686 0.52 -0.7 742,652 - CCNA_00686 0.53 -0.6 742,652 - CCNA_00686 0.53 +0.2 742,666 - CCNA_00686 0.54 -1.0 742,668 - CCNA_00686 0.54 +0.1 742,670 + CCNA_00686 0.54 -2.6
Or see this region's nucleotide sequence