Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23135

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23130 and ABZR87_RS23135 are separated by 11 nucleotidesABZR87_RS23135 and ABZR87_RS23140 are separated by 24 nucleotidesABZR87_RS23140 and ABZR87_RS23145 are separated by 13 nucleotides ABZR87_RS23130: ABZR87_RS23130 - MFS transporter, at 1,551,998 to 1,553,290 _RS23130 ABZR87_RS23135: ABZR87_RS23135 - amidase family protein, at 1,553,302 to 1,554,825 _RS23135 ABZR87_RS23140: ABZR87_RS23140 - RidA family protein, at 1,554,850 to 1,555,206 _RS23140 ABZR87_RS23145: ABZR87_RS23145 - FAD-binding oxidoreductase, at 1,555,220 to 1,556,473 _RS23145 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -2 -1 0 1 2at 1552.325 kb on + strand, within ABZR87_RS23130at 1552.325 kb on + strand, within ABZR87_RS23130at 1552.326 kb on - strand, within ABZR87_RS23130at 1552.326 kb on - strand, within ABZR87_RS23130at 1552.326 kb on - strand, within ABZR87_RS23130at 1552.326 kb on - strand, within ABZR87_RS23130at 1552.326 kb on - strand, within ABZR87_RS23130at 1552.326 kb on - strand, within ABZR87_RS23130at 1552.769 kb on + strand, within ABZR87_RS23130at 1552.769 kb on + strand, within ABZR87_RS23130at 1552.770 kb on - strand, within ABZR87_RS23130at 1552.770 kb on - strand, within ABZR87_RS23130at 1552.770 kb on - strand, within ABZR87_RS23130at 1552.770 kb on - strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.816 kb on + strand, within ABZR87_RS23130at 1552.817 kb on - strand, within ABZR87_RS23130at 1552.817 kb on - strand, within ABZR87_RS23130at 1552.817 kb on - strand, within ABZR87_RS23130at 1552.817 kb on - strand, within ABZR87_RS23130at 1552.908 kb on - strand, within ABZR87_RS23130at 1553.009 kb on + strand, within ABZR87_RS23130at 1553.009 kb on + strand, within ABZR87_RS23130at 1553.010 kb on - strand, within ABZR87_RS23130at 1553.010 kb on - strand, within ABZR87_RS23130at 1553.010 kb on - strand, within ABZR87_RS23130at 1553.016 kb on + strand, within ABZR87_RS23130at 1553.097 kb on + strand, within ABZR87_RS23130at 1553.097 kb on + strand, within ABZR87_RS23130at 1553.097 kb on + strand, within ABZR87_RS23130at 1553.098 kb on - strand, within ABZR87_RS23130at 1553.098 kb on - strand, within ABZR87_RS23130at 1553.098 kb on - strand, within ABZR87_RS23130at 1553.123 kb on + strand, within ABZR87_RS23130at 1553.123 kb on + strand, within ABZR87_RS23130at 1553.123 kb on + strand, within ABZR87_RS23130at 1553.123 kb on + strand, within ABZR87_RS23130at 1553.124 kb on - strand, within ABZR87_RS23130at 1553.124 kb on - strand, within ABZR87_RS23130at 1553.124 kb on - strand, within ABZR87_RS23130at 1553.124 kb on - strand, within ABZR87_RS23130at 1553.124 kb on - strand, within ABZR87_RS23130at 1553.124 kb on - strand, within ABZR87_RS23130at 1553.216 kb on + strandat 1553.216 kb on + strandat 1553.216 kb on + strandat 1553.217 kb on - strandat 1553.584 kb on + strand, within ABZR87_RS23135at 1553.584 kb on + strand, within ABZR87_RS23135at 1553.585 kb on - strand, within ABZR87_RS23135at 1553.585 kb on - strand, within ABZR87_RS23135at 1553.585 kb on - strand, within ABZR87_RS23135at 1553.585 kb on - strand, within ABZR87_RS23135at 1553.585 kb on - strand, within ABZR87_RS23135at 1554.283 kb on + strand, within ABZR87_RS23135at 1554.283 kb on + strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.329 kb on - strand, within ABZR87_RS23135at 1554.329 kb on - strand, within ABZR87_RS23135at 1554.424 kb on + strand, within ABZR87_RS23135at 1554.425 kb on - strand, within ABZR87_RS23135at 1554.481 kb on + strand, within ABZR87_RS23135at 1554.482 kb on - strand, within ABZR87_RS23135at 1554.482 kb on - strand, within ABZR87_RS23135at 1554.517 kb on + strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.521 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.700 kb on - strandat 1554.700 kb on - strandat 1554.830 kb on - strandat 1554.830 kb on - strandat 1554.830 kb on - strandat 1554.859 kb on - strandat 1555.204 kb on + strandat 1555.204 kb on + strandat 1555.264 kb on - strandat 1555.379 kb on + strand, within ABZR87_RS23145at 1555.379 kb on + strand, within ABZR87_RS23145at 1555.380 kb on - strand, within ABZR87_RS23145at 1555.380 kb on - strand, within ABZR87_RS23145at 1555.386 kb on - strand, within ABZR87_RS23145at 1555.422 kb on - strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.452 kb on - strand, within ABZR87_RS23145at 1555.544 kb on + strand, within ABZR87_RS23145at 1555.545 kb on - strand, within ABZR87_RS23145at 1555.545 kb on - strand, within ABZR87_RS23145at 1555.790 kb on + strand, within ABZR87_RS23145at 1555.792 kb on + strand, within ABZR87_RS23145at 1555.793 kb on - strand, within ABZR87_RS23145at 1555.793 kb on - strand, within ABZR87_RS23145

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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1,552,325 + ABZR87_RS23130 0.25 +0.1
1,552,325 + ABZR87_RS23130 0.25 -1.4
1,552,326 - ABZR87_RS23130 0.25 +0.9
1,552,326 - ABZR87_RS23130 0.25 -0.2
1,552,326 - ABZR87_RS23130 0.25 -1.4
1,552,326 - ABZR87_RS23130 0.25 +0.6
1,552,326 - ABZR87_RS23130 0.25 +0.1
1,552,326 - ABZR87_RS23130 0.25 +1.1
1,552,769 + ABZR87_RS23130 0.60 -0.8
1,552,769 + ABZR87_RS23130 0.60 -0.2
1,552,770 - ABZR87_RS23130 0.60 -0.2
1,552,770 - ABZR87_RS23130 0.60 +1.3
1,552,770 - ABZR87_RS23130 0.60 -1.2
1,552,770 - ABZR87_RS23130 0.60 -0.2
1,552,816 + ABZR87_RS23130 0.63 +0.7
1,552,816 + ABZR87_RS23130 0.63 -0.5
1,552,816 + ABZR87_RS23130 0.63 -2.1
1,552,816 + ABZR87_RS23130 0.63 -1.2
1,552,816 + ABZR87_RS23130 0.63 -1.3
1,552,816 + ABZR87_RS23130 0.63 -0.6
1,552,816 + ABZR87_RS23130 0.63 +0.3
1,552,816 + ABZR87_RS23130 0.63 -0.7
1,552,817 - ABZR87_RS23130 0.63 +0.0
1,552,817 - ABZR87_RS23130 0.63 +0.5
1,552,817 - ABZR87_RS23130 0.63 -0.7
1,552,817 - ABZR87_RS23130 0.63 +0.1
1,552,908 - ABZR87_RS23130 0.70 +1.3
1,553,009 + ABZR87_RS23130 0.78 -1.6
1,553,009 + ABZR87_RS23130 0.78 -0.7
1,553,010 - ABZR87_RS23130 0.78 +0.4
1,553,010 - ABZR87_RS23130 0.78 -0.1
1,553,010 - ABZR87_RS23130 0.78 -0.0
1,553,016 + ABZR87_RS23130 0.79 -0.2
1,553,097 + ABZR87_RS23130 0.85 -0.2
1,553,097 + ABZR87_RS23130 0.85 +0.3
1,553,097 + ABZR87_RS23130 0.85 -0.1
1,553,098 - ABZR87_RS23130 0.85 +0.2
1,553,098 - ABZR87_RS23130 0.85 +2.6
1,553,098 - ABZR87_RS23130 0.85 -0.2
1,553,123 + ABZR87_RS23130 0.87 +1.6
1,553,123 + ABZR87_RS23130 0.87 +1.4
1,553,123 + ABZR87_RS23130 0.87 -0.1
1,553,123 + ABZR87_RS23130 0.87 +2.5
1,553,124 - ABZR87_RS23130 0.87 -0.9
1,553,124 - ABZR87_RS23130 0.87 +0.4
1,553,124 - ABZR87_RS23130 0.87 +0.2
1,553,124 - ABZR87_RS23130 0.87 +0.1
1,553,124 - ABZR87_RS23130 0.87 +0.0
1,553,124 - ABZR87_RS23130 0.87 +2.0
1,553,216 + +0.2
1,553,216 + -0.9
1,553,216 + -2.3
1,553,217 - -1.7
1,553,584 + ABZR87_RS23135 0.19 +0.5
1,553,584 + ABZR87_RS23135 0.19 +1.6
1,553,585 - ABZR87_RS23135 0.19 -1.7
1,553,585 - ABZR87_RS23135 0.19 +0.1
1,553,585 - ABZR87_RS23135 0.19 +1.5
1,553,585 - ABZR87_RS23135 0.19 -1.4
1,553,585 - ABZR87_RS23135 0.19 -0.3
1,554,283 + ABZR87_RS23135 0.64 -1.4
1,554,283 + ABZR87_RS23135 0.64 +0.1
1,554,284 - ABZR87_RS23135 0.64 +0.2
1,554,284 - ABZR87_RS23135 0.64 -1.0
1,554,284 - ABZR87_RS23135 0.64 -0.6
1,554,284 - ABZR87_RS23135 0.64 -1.2
1,554,329 - ABZR87_RS23135 0.67 -0.5
1,554,329 - ABZR87_RS23135 0.67 +0.6
1,554,424 + ABZR87_RS23135 0.74 +0.2
1,554,425 - ABZR87_RS23135 0.74 +1.1
1,554,481 + ABZR87_RS23135 0.77 +0.6
1,554,482 - ABZR87_RS23135 0.77 -0.7
1,554,482 - ABZR87_RS23135 0.77 +0.1
1,554,517 + ABZR87_RS23135 0.80 -1.0
1,554,518 - ABZR87_RS23135 0.80 -0.7
1,554,518 - ABZR87_RS23135 0.80 -0.2
1,554,518 - ABZR87_RS23135 0.80 -0.8
1,554,518 - ABZR87_RS23135 0.80 +1.5
1,554,518 - ABZR87_RS23135 0.80 -0.0
1,554,521 - ABZR87_RS23135 0.80 -0.1
1,554,542 - ABZR87_RS23135 0.81 +0.2
1,554,542 - ABZR87_RS23135 0.81 -0.6
1,554,542 - ABZR87_RS23135 0.81 -0.4
1,554,542 - ABZR87_RS23135 0.81 -0.1
1,554,700 - +0.2
1,554,700 - +0.4
1,554,830 - +0.1
1,554,830 - +0.1
1,554,830 - -0.0
1,554,859 - +1.8
1,555,204 + -0.2
1,555,204 + +0.1
1,555,264 - +1.1
1,555,379 + ABZR87_RS23145 0.13 +1.1
1,555,379 + ABZR87_RS23145 0.13 +0.1
1,555,380 - ABZR87_RS23145 0.13 +0.4
1,555,380 - ABZR87_RS23145 0.13 -0.8
1,555,386 - ABZR87_RS23145 0.13 -1.1
1,555,422 - ABZR87_RS23145 0.16 +0.7
1,555,451 + ABZR87_RS23145 0.18 -0.8
1,555,451 + ABZR87_RS23145 0.18 -0.6
1,555,451 + ABZR87_RS23145 0.18 -0.9
1,555,451 + ABZR87_RS23145 0.18 +2.0
1,555,451 + ABZR87_RS23145 0.18 +1.0
1,555,451 + ABZR87_RS23145 0.18 -1.1
1,555,452 - ABZR87_RS23145 0.19 +0.1
1,555,544 + ABZR87_RS23145 0.26 +0.6
1,555,545 - ABZR87_RS23145 0.26 +0.2
1,555,545 - ABZR87_RS23145 0.26 -1.1
1,555,790 + ABZR87_RS23145 0.45 +2.0
1,555,792 + ABZR87_RS23145 0.46 -0.3
1,555,793 - ABZR87_RS23145 0.46 +0.8
1,555,793 - ABZR87_RS23145 0.46 -0.4

Or see this region's nucleotide sequence