Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22315 and ABZR87_RS22320 are separated by 260 nucleotides ABZR87_RS22320 and ABZR87_RS22325 are separated by 106 nucleotides ABZR87_RS22325 and ABZR87_RS22330 are separated by 460 nucleotides
ABZR87_RS22315: ABZR87_RS22315 - porin, at 1,364,769 to 1,365,830
_RS22315
ABZR87_RS22320: ABZR87_RS22320 - GntR family transcriptional regulator, at 1,366,091 to 1,366,819
_RS22320
ABZR87_RS22325: ABZR87_RS22325 - H-NS histone family protein, at 1,366,926 to 1,367,216
_RS22325
ABZR87_RS22330: ABZR87_RS22330 - hypothetical protein, at 1,367,677 to 1,368,036
_RS22330
Position (kb) 1366
1367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 1365.154 kb on + strand, within ABZR87_RS22315 at 1365.262 kb on + strand, within ABZR87_RS22315 at 1365.263 kb on + strand, within ABZR87_RS22315 at 1365.263 kb on - strand, within ABZR87_RS22315 at 1365.263 kb on - strand, within ABZR87_RS22315 at 1365.304 kb on + strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.305 kb on - strand, within ABZR87_RS22315 at 1365.382 kb on + strand, within ABZR87_RS22315 at 1365.382 kb on + strand, within ABZR87_RS22315 at 1365.382 kb on + strand, within ABZR87_RS22315 at 1365.382 kb on + strand, within ABZR87_RS22315 at 1365.382 kb on + strand, within ABZR87_RS22315 at 1365.382 kb on + strand, within ABZR87_RS22315 at 1365.383 kb on - strand, within ABZR87_RS22315 at 1365.412 kb on + strand, within ABZR87_RS22315 at 1365.412 kb on + strand, within ABZR87_RS22315 at 1365.412 kb on + strand, within ABZR87_RS22315 at 1365.412 kb on + strand, within ABZR87_RS22315 at 1365.413 kb on - strand, within ABZR87_RS22315 at 1365.413 kb on - strand, within ABZR87_RS22315 at 1365.413 kb on - strand, within ABZR87_RS22315 at 1365.432 kb on - strand, within ABZR87_RS22315 at 1365.454 kb on + strand, within ABZR87_RS22315 at 1365.454 kb on + strand, within ABZR87_RS22315 at 1365.454 kb on + strand, within ABZR87_RS22315 at 1365.454 kb on + strand, within ABZR87_RS22315 at 1365.454 kb on + strand, within ABZR87_RS22315 at 1365.454 kb on + strand, within ABZR87_RS22315 at 1365.455 kb on - strand, within ABZR87_RS22315 at 1365.455 kb on - strand, within ABZR87_RS22315 at 1365.494 kb on + strand, within ABZR87_RS22315 at 1365.494 kb on + strand, within ABZR87_RS22315 at 1365.494 kb on + strand, within ABZR87_RS22315 at 1365.494 kb on + strand, within ABZR87_RS22315 at 1365.494 kb on + strand, within ABZR87_RS22315 at 1365.495 kb on - strand, within ABZR87_RS22315 at 1365.495 kb on - strand, within ABZR87_RS22315 at 1365.495 kb on - strand, within ABZR87_RS22315 at 1365.521 kb on + strand, within ABZR87_RS22315 at 1365.522 kb on - strand, within ABZR87_RS22315 at 1365.522 kb on - strand, within ABZR87_RS22315 at 1365.522 kb on - strand, within ABZR87_RS22315 at 1365.522 kb on - strand, within ABZR87_RS22315 at 1365.522 kb on - strand, within ABZR87_RS22315 at 1365.646 kb on + strand, within ABZR87_RS22315 at 1365.646 kb on + strand, within ABZR87_RS22315 at 1365.646 kb on + strand, within ABZR87_RS22315 at 1365.646 kb on + strand, within ABZR87_RS22315 at 1365.647 kb on - strand, within ABZR87_RS22315 at 1365.647 kb on - strand, within ABZR87_RS22315 at 1365.647 kb on - strand, within ABZR87_RS22315 at 1365.647 kb on - strand, within ABZR87_RS22315 at 1365.736 kb on + strand at 1365.736 kb on + strand at 1365.736 kb on + strand at 1365.736 kb on + strand at 1365.737 kb on - strand at 1365.950 kb on - strand at 1365.950 kb on - strand at 1365.950 kb on - strand at 1365.950 kb on - strand at 1366.010 kb on + strand at 1366.010 kb on + strand at 1366.010 kb on + strand at 1366.011 kb on - strand at 1366.011 kb on - strand at 1366.011 kb on - strand at 1366.011 kb on - strand at 1366.011 kb on - strand at 1366.011 kb on - strand at 1366.011 kb on - strand at 1366.019 kb on + strand at 1366.020 kb on - strand at 1366.129 kb on + strand at 1366.129 kb on + strand at 1366.130 kb on - strand at 1366.130 kb on - strand at 1366.130 kb on - strand at 1366.130 kb on - strand at 1366.130 kb on - strand at 1366.131 kb on + strand at 1366.131 kb on + strand at 1366.131 kb on + strand at 1366.155 kb on + strand at 1366.155 kb on + strand at 1366.155 kb on + strand at 1366.155 kb on + strand at 1366.155 kb on + strand at 1366.155 kb on + strand at 1366.156 kb on - strand at 1366.156 kb on - strand at 1366.156 kb on - strand at 1366.156 kb on - strand at 1366.188 kb on + strand, within ABZR87_RS22320 at 1366.189 kb on - strand, within ABZR87_RS22320 at 1366.189 kb on - strand, within ABZR87_RS22320 at 1366.390 kb on + strand, within ABZR87_RS22320 at 1366.390 kb on + strand, within ABZR87_RS22320 at 1366.391 kb on - strand, within ABZR87_RS22320 at 1366.391 kb on - strand, within ABZR87_RS22320 at 1366.522 kb on + strand, within ABZR87_RS22320 at 1366.522 kb on + strand, within ABZR87_RS22320 at 1366.522 kb on + strand, within ABZR87_RS22320 at 1366.523 kb on - strand, within ABZR87_RS22320 at 1366.523 kb on - strand, within ABZR87_RS22320 at 1366.523 kb on - strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.524 kb on + strand, within ABZR87_RS22320 at 1366.525 kb on - strand, within ABZR87_RS22320 at 1366.539 kb on - strand, within ABZR87_RS22320 at 1366.539 kb on - strand, within ABZR87_RS22320 at 1366.539 kb on - strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.542 kb on + strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.543 kb on - strand, within ABZR87_RS22320 at 1366.575 kb on + strand, within ABZR87_RS22320 at 1366.576 kb on - strand, within ABZR87_RS22320 at 1366.694 kb on + strand, within ABZR87_RS22320 at 1366.695 kb on - strand, within ABZR87_RS22320 at 1366.701 kb on + strand, within ABZR87_RS22320 at 1366.701 kb on + strand, within ABZR87_RS22320 at 1366.701 kb on + strand, within ABZR87_RS22320 at 1366.797 kb on + strand at 1366.797 kb on + strand at 1366.797 kb on + strand at 1366.798 kb on - strand at 1366.798 kb on - strand at 1366.798 kb on - strand at 1366.798 kb on - strand at 1366.798 kb on - strand at 1366.798 kb on - strand at 1366.828 kb on + strand at 1366.828 kb on + strand at 1366.828 kb on + strand at 1366.829 kb on - strand at 1366.830 kb on + strand at 1366.830 kb on + strand at 1366.830 kb on + strand at 1366.830 kb on + strand at 1366.830 kb on + strand at 1366.830 kb on + strand at 1366.830 kb on + strand at 1366.831 kb on - strand at 1366.831 kb on - strand at 1366.831 kb on - strand at 1367.017 kb on + strand, within ABZR87_RS22325 at 1367.018 kb on - strand, within ABZR87_RS22325 at 1367.018 kb on - strand, within ABZR87_RS22325 at 1367.098 kb on + strand, within ABZR87_RS22325 at 1367.099 kb on - strand, within ABZR87_RS22325 at 1367.099 kb on - strand, within ABZR87_RS22325 at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.206 kb on + strand at 1367.207 kb on - strand at 1367.207 kb on - strand at 1367.207 kb on - strand at 1367.207 kb on - strand at 1367.207 kb on - strand at 1367.207 kb on - strand at 1367.229 kb on + strand at 1367.266 kb on - strand at 1367.406 kb on + strand at 1367.407 kb on - strand at 1367.411 kb on + strand at 1367.428 kb on + strand at 1367.429 kb on - strand at 1367.438 kb on + strand at 1367.438 kb on + strand at 1367.439 kb on - strand at 1367.439 kb on - strand at 1367.467 kb on + strand at 1367.467 kb on + strand at 1367.467 kb on + strand at 1367.467 kb on + strand at 1367.468 kb on - strand at 1367.468 kb on - strand at 1367.468 kb on - strand at 1367.542 kb on + strand at 1367.542 kb on + strand at 1367.543 kb on - strand at 1367.628 kb on - strand at 1367.628 kb on - strand at 1367.704 kb on + strand at 1367.704 kb on + strand at 1367.705 kb on - strand at 1367.705 kb on - strand at 1367.707 kb on + strand at 1367.707 kb on + strand at 1367.707 kb on + strand at 1367.708 kb on - strand at 1367.708 kb on - strand at 1367.800 kb on + strand, within ABZR87_RS22330 at 1367.800 kb on + strand, within ABZR87_RS22330
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 1,365,154 + ABZR87_RS22315 0.36 -0.1 1,365,262 + ABZR87_RS22315 0.46 +0.4 1,365,263 + ABZR87_RS22315 0.47 +0.9 1,365,263 - ABZR87_RS22315 0.47 -0.5 1,365,263 - ABZR87_RS22315 0.47 -0.6 1,365,304 + ABZR87_RS22315 0.50 -0.8 1,365,305 - ABZR87_RS22315 0.50 -0.6 1,365,305 - ABZR87_RS22315 0.50 +0.8 1,365,305 - ABZR87_RS22315 0.50 -1.3 1,365,305 - ABZR87_RS22315 0.50 +0.1 1,365,305 - ABZR87_RS22315 0.50 +1.4 1,365,305 - ABZR87_RS22315 0.50 +1.1 1,365,305 - ABZR87_RS22315 0.50 -2.1 1,365,305 - ABZR87_RS22315 0.50 +0.4 1,365,305 - ABZR87_RS22315 0.50 +1.0 1,365,382 + ABZR87_RS22315 0.58 +0.2 1,365,382 + ABZR87_RS22315 0.58 -0.5 1,365,382 + ABZR87_RS22315 0.58 -0.5 1,365,382 + ABZR87_RS22315 0.58 +1.0 1,365,382 + ABZR87_RS22315 0.58 -0.9 1,365,382 + ABZR87_RS22315 0.58 -0.7 1,365,383 - ABZR87_RS22315 0.58 -1.0 1,365,412 + ABZR87_RS22315 0.61 -2.9 1,365,412 + ABZR87_RS22315 0.61 +0.2 1,365,412 + ABZR87_RS22315 0.61 -0.5 1,365,412 + ABZR87_RS22315 0.61 -1.0 1,365,413 - ABZR87_RS22315 0.61 +0.4 1,365,413 - ABZR87_RS22315 0.61 -0.6 1,365,413 - ABZR87_RS22315 0.61 +0.6 1,365,432 - ABZR87_RS22315 0.62 +1.0 1,365,454 + ABZR87_RS22315 0.65 -0.0 1,365,454 + ABZR87_RS22315 0.65 +0.4 1,365,454 + ABZR87_RS22315 0.65 +0.3 1,365,454 + ABZR87_RS22315 0.65 +0.6 1,365,454 + ABZR87_RS22315 0.65 -0.6 1,365,454 + ABZR87_RS22315 0.65 +0.4 1,365,455 - ABZR87_RS22315 0.65 +0.1 1,365,455 - ABZR87_RS22315 0.65 -0.2 1,365,494 + ABZR87_RS22315 0.68 +0.3 1,365,494 + ABZR87_RS22315 0.68 +0.7 1,365,494 + ABZR87_RS22315 0.68 -0.6 1,365,494 + ABZR87_RS22315 0.68 -0.7 1,365,494 + ABZR87_RS22315 0.68 +0.5 1,365,495 - ABZR87_RS22315 0.68 +0.8 1,365,495 - ABZR87_RS22315 0.68 -1.2 1,365,495 - ABZR87_RS22315 0.68 -0.5 1,365,521 + ABZR87_RS22315 0.71 -1.0 1,365,522 - ABZR87_RS22315 0.71 -1.4 1,365,522 - ABZR87_RS22315 0.71 -0.7 1,365,522 - ABZR87_RS22315 0.71 -0.5 1,365,522 - ABZR87_RS22315 0.71 +0.7 1,365,522 - ABZR87_RS22315 0.71 +0.1 1,365,646 + ABZR87_RS22315 0.83 -0.4 1,365,646 + ABZR87_RS22315 0.83 -1.6 1,365,646 + ABZR87_RS22315 0.83 +1.2 1,365,646 + ABZR87_RS22315 0.83 +1.4 1,365,647 - ABZR87_RS22315 0.83 +0.9 1,365,647 - ABZR87_RS22315 0.83 +0.3 1,365,647 - ABZR87_RS22315 0.83 -0.7 1,365,647 - ABZR87_RS22315 0.83 +0.7 1,365,736 + -1.9 1,365,736 + +0.9 1,365,736 + -0.8 1,365,736 + +1.0 1,365,737 - +0.4 1,365,950 - +0.6 1,365,950 - -0.8 1,365,950 - -1.3 1,365,950 - +0.3 1,366,010 + -0.7 1,366,010 + +2.2 1,366,010 + -1.1 1,366,011 - +0.1 1,366,011 - -1.1 1,366,011 - +0.4 1,366,011 - -1.2 1,366,011 - -0.2 1,366,011 - -0.9 1,366,011 - +0.1 1,366,019 + +1.2 1,366,020 - +0.1 1,366,129 + +3.0 1,366,129 + +0.1 1,366,130 - -0.6 1,366,130 - +1.0 1,366,130 - -0.7 1,366,130 - +0.0 1,366,130 - -1.2 1,366,131 + -1.8 1,366,131 + +0.2 1,366,131 + -0.1 1,366,155 + +0.4 1,366,155 + +1.3 1,366,155 + -0.8 1,366,155 + +0.0 1,366,155 + +0.5 1,366,155 + -1.2 1,366,156 - +0.7 1,366,156 - -0.1 1,366,156 - -0.1 1,366,156 - +0.5 1,366,188 + ABZR87_RS22320 0.13 -1.1 1,366,189 - ABZR87_RS22320 0.13 +0.1 1,366,189 - ABZR87_RS22320 0.13 -0.6 1,366,390 + ABZR87_RS22320 0.41 +1.6 1,366,390 + ABZR87_RS22320 0.41 -1.3 1,366,391 - ABZR87_RS22320 0.41 +0.2 1,366,391 - ABZR87_RS22320 0.41 -0.7 1,366,522 + ABZR87_RS22320 0.59 -0.6 1,366,522 + ABZR87_RS22320 0.59 -0.2 1,366,522 + ABZR87_RS22320 0.59 +0.2 1,366,523 - ABZR87_RS22320 0.59 -1.7 1,366,523 - ABZR87_RS22320 0.59 +0.5 1,366,523 - ABZR87_RS22320 0.59 +0.2 1,366,524 + ABZR87_RS22320 0.59 +0.5 1,366,524 + ABZR87_RS22320 0.59 -2.1 1,366,524 + ABZR87_RS22320 0.59 +0.7 1,366,524 + ABZR87_RS22320 0.59 +0.1 1,366,524 + ABZR87_RS22320 0.59 +0.1 1,366,524 + ABZR87_RS22320 0.59 +0.6 1,366,524 + ABZR87_RS22320 0.59 -1.8 1,366,524 + ABZR87_RS22320 0.59 +0.2 1,366,524 + ABZR87_RS22320 0.59 +0.7 1,366,525 - ABZR87_RS22320 0.60 -0.6 1,366,539 - ABZR87_RS22320 0.61 -0.3 1,366,539 - ABZR87_RS22320 0.61 -2.0 1,366,539 - ABZR87_RS22320 0.61 +0.5 1,366,542 + ABZR87_RS22320 0.62 -0.9 1,366,542 + ABZR87_RS22320 0.62 -0.6 1,366,542 + ABZR87_RS22320 0.62 -2.4 1,366,542 + ABZR87_RS22320 0.62 +1.3 1,366,542 + ABZR87_RS22320 0.62 +0.3 1,366,542 + ABZR87_RS22320 0.62 +1.1 1,366,542 + ABZR87_RS22320 0.62 -0.4 1,366,543 - ABZR87_RS22320 0.62 -0.1 1,366,543 - ABZR87_RS22320 0.62 -0.5 1,366,543 - ABZR87_RS22320 0.62 -0.4 1,366,543 - ABZR87_RS22320 0.62 +0.0 1,366,543 - ABZR87_RS22320 0.62 -0.7 1,366,543 - ABZR87_RS22320 0.62 +1.3 1,366,543 - ABZR87_RS22320 0.62 -0.9 1,366,543 - ABZR87_RS22320 0.62 +2.0 1,366,543 - ABZR87_RS22320 0.62 -1.1 1,366,543 - ABZR87_RS22320 0.62 -0.5 1,366,543 - ABZR87_RS22320 0.62 -0.7 1,366,575 + ABZR87_RS22320 0.66 +0.1 1,366,576 - ABZR87_RS22320 0.67 -2.3 1,366,694 + ABZR87_RS22320 0.83 -1.6 1,366,695 - ABZR87_RS22320 0.83 -3.1 1,366,701 + ABZR87_RS22320 0.84 -0.3 1,366,701 + ABZR87_RS22320 0.84 +0.1 1,366,701 + ABZR87_RS22320 0.84 +0.1 1,366,797 + -0.4 1,366,797 + -0.7 1,366,797 + +1.6 1,366,798 - -1.1 1,366,798 - -0.6 1,366,798 - -0.9 1,366,798 - +0.5 1,366,798 - +0.1 1,366,798 - -0.8 1,366,828 + +1.8 1,366,828 + -0.7 1,366,828 + -0.4 1,366,829 - -0.9 1,366,830 + +0.5 1,366,830 + +0.1 1,366,830 + +0.2 1,366,830 + -0.3 1,366,830 + -1.1 1,366,830 + +0.3 1,366,830 + -0.8 1,366,831 - -0.4 1,366,831 - +0.7 1,366,831 - -0.7 1,367,017 + ABZR87_RS22325 0.31 -1.5 1,367,018 - ABZR87_RS22325 0.32 -0.9 1,367,018 - ABZR87_RS22325 0.32 -1.6 1,367,098 + ABZR87_RS22325 0.59 -1.4 1,367,099 - ABZR87_RS22325 0.59 -3.2 1,367,099 - ABZR87_RS22325 0.59 -0.6 1,367,206 + +7.9 1,367,206 + +6.3 1,367,206 + +7.4 1,367,206 + +6.3 1,367,206 + +5.4 1,367,206 + +7.5 1,367,206 + +7.9 1,367,206 + +2.1 1,367,207 - -0.7 1,367,207 - -2.3 1,367,207 - -0.8 1,367,207 - -3.1 1,367,207 - -1.2 1,367,207 - -0.0 1,367,229 + +8.1 1,367,266 - -0.4 1,367,406 + +10.1 1,367,407 - +0.2 1,367,411 + +8.9 1,367,428 + +10.4 1,367,429 - +0.9 1,367,438 + +10.6 1,367,438 + +11.2 1,367,439 - +1.0 1,367,439 - +0.0 1,367,467 + +11.0 1,367,467 + +10.8 1,367,467 + +11.4 1,367,467 + +12.0 1,367,468 - +0.8 1,367,468 - -0.6 1,367,468 - -1.0 1,367,542 + +8.6 1,367,542 + +10.3 1,367,543 - +0.4 1,367,628 - -0.9 1,367,628 - +0.4 1,367,704 + -0.2 1,367,704 + -0.1 1,367,705 - +0.4 1,367,705 - +1.4 1,367,707 + -0.2 1,367,707 + +1.7 1,367,707 + -1.1 1,367,708 - -0.9 1,367,708 - -0.7 1,367,800 + ABZR87_RS22330 0.34 +0.5 1,367,800 + ABZR87_RS22330 0.34 -0.4
Or see this region's nucleotide sequence