Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21945

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21935 and ABZR87_RS21940 are separated by 44 nucleotidesABZR87_RS21940 and ABZR87_RS21945 overlap by 1 nucleotidesABZR87_RS21945 and ABZR87_RS21950 overlap by 8 nucleotidesABZR87_RS21950 and ABZR87_RS21955 are separated by 62 nucleotides ABZR87_RS21935: ABZR87_RS21935 - DUF6726 family protein, at 1,297,423 to 1,297,590 _RS21935 ABZR87_RS21940: ABZR87_RS21940 - hypothetical protein, at 1,297,635 to 1,298,147 _RS21940 ABZR87_RS21945: ABZR87_RS21945 - glycoside hydrolase family 19 protein, at 1,298,147 to 1,298,710 _RS21945 ABZR87_RS21950: ABZR87_RS21950 - hypothetical protein, at 1,298,703 to 1,299,113 _RS21950 ABZR87_RS21955: ABZR87_RS21955 - hypothetical protein, at 1,299,176 to 1,299,739 _RS21955 Position (kb) 1298 1299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1297.629 kb on + strandat 1297.629 kb on + strandat 1297.629 kb on + strandat 1297.629 kb on + strandat 1297.630 kb on - strandat 1297.630 kb on - strandat 1297.630 kb on - strandat 1297.630 kb on - strandat 1297.636 kb on + strandat 1297.879 kb on - strand, within ABZR87_RS21940at 1298.397 kb on + strand, within ABZR87_RS21945at 1298.439 kb on + strand, within ABZR87_RS21945at 1298.440 kb on - strand, within ABZR87_RS21945at 1298.490 kb on + strand, within ABZR87_RS21945at 1298.491 kb on - strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.533 kb on - strand, within ABZR87_RS21945at 1298.720 kb on + strandat 1298.720 kb on + strandat 1298.721 kb on - strandat 1298.836 kb on + strand, within ABZR87_RS21950at 1298.836 kb on + strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.896 kb on + strand, within ABZR87_RS21950at 1298.896 kb on + strand, within ABZR87_RS21950at 1299.099 kb on - strandat 1299.177 kb on + strandat 1299.177 kb on + strandat 1299.177 kb on + strandat 1299.178 kb on - strandat 1299.244 kb on - strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.442 kb on + strand, within ABZR87_RS21955at 1299.442 kb on + strand, within ABZR87_RS21955at 1299.442 kb on + strand, within ABZR87_RS21955at 1299.443 kb on - strand, within ABZR87_RS21955at 1299.443 kb on - strand, within ABZR87_RS21955at 1299.614 kb on - strand, within ABZR87_RS21955at 1299.637 kb on + strand, within ABZR87_RS21955at 1299.682 kb on + strand, within ABZR87_RS21955at 1299.690 kb on + strandat 1299.690 kb on + strandat 1299.690 kb on + strandat 1299.691 kb on - strandat 1299.691 kb on - strandat 1299.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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1,297,629 + +0.3
1,297,629 + -0.3
1,297,629 + +0.9
1,297,629 + -0.9
1,297,630 - -0.8
1,297,630 - +0.5
1,297,630 - -0.2
1,297,630 - -0.2
1,297,636 + -0.6
1,297,879 - ABZR87_RS21940 0.48 -1.1
1,298,397 + ABZR87_RS21945 0.44 -0.2
1,298,439 + ABZR87_RS21945 0.52 +0.3
1,298,440 - ABZR87_RS21945 0.52 -1.9
1,298,490 + ABZR87_RS21945 0.61 -1.0
1,298,491 - ABZR87_RS21945 0.61 -2.4
1,298,532 + ABZR87_RS21945 0.68 +1.1
1,298,532 + ABZR87_RS21945 0.68 +2.6
1,298,532 + ABZR87_RS21945 0.68 +0.7
1,298,532 + ABZR87_RS21945 0.68 +0.2
1,298,533 - ABZR87_RS21945 0.68 +0.6
1,298,720 + +0.2
1,298,720 + -1.5
1,298,721 - -2.9
1,298,836 + ABZR87_RS21950 0.32 -3.3
1,298,836 + ABZR87_RS21950 0.32 -3.9
1,298,837 - ABZR87_RS21950 0.33 -1.2
1,298,837 - ABZR87_RS21950 0.33 -1.6
1,298,837 - ABZR87_RS21950 0.33 -2.3
1,298,896 + ABZR87_RS21950 0.47 -2.4
1,298,896 + ABZR87_RS21950 0.47 -1.8
1,299,099 - -1.5
1,299,177 + -0.6
1,299,177 + +0.1
1,299,177 + -0.1
1,299,178 - -3.8
1,299,244 - ABZR87_RS21955 0.12 -2.3
1,299,438 + ABZR87_RS21955 0.46 -0.0
1,299,438 + ABZR87_RS21955 0.46 -1.0
1,299,438 + ABZR87_RS21955 0.46 -0.0
1,299,438 + ABZR87_RS21955 0.46 +0.2
1,299,438 + ABZR87_RS21955 0.46 -0.4
1,299,439 - ABZR87_RS21955 0.47 -4.3
1,299,439 - ABZR87_RS21955 0.47 -2.4
1,299,439 - ABZR87_RS21955 0.47 -3.5
1,299,439 - ABZR87_RS21955 0.47 -1.4
1,299,442 + ABZR87_RS21955 0.47 +1.9
1,299,442 + ABZR87_RS21955 0.47 -0.5
1,299,442 + ABZR87_RS21955 0.47 +0.7
1,299,443 - ABZR87_RS21955 0.47 +0.0
1,299,443 - ABZR87_RS21955 0.47 -2.2
1,299,614 - ABZR87_RS21955 0.78 -2.5
1,299,637 + ABZR87_RS21955 0.82 -0.8
1,299,682 + ABZR87_RS21955 0.90 -0.3
1,299,690 + +0.0
1,299,690 + +0.0
1,299,690 + +1.4
1,299,691 - -1.9
1,299,691 - +0.4
1,299,691 - -0.8

Or see this region's nucleotide sequence