Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21785

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21775 and ABZR87_RS21780 are separated by 48 nucleotidesABZR87_RS21780 and ABZR87_RS21785 are separated by 249 nucleotidesABZR87_RS21785 and ABZR87_RS21790 are separated by 73 nucleotidesABZR87_RS21790 and ABZR87_RS21795 are separated by 48 nucleotides ABZR87_RS21775: ABZR87_RS21775 - serine O-acetyltransferase EpsC, at 1,270,688 to 1,271,722 _RS21775 ABZR87_RS21780: ABZR87_RS21780 - rhodanese-like domain-containing protein, at 1,271,771 to 1,272,289 _RS21780 ABZR87_RS21785: ABZR87_RS21785 - PLP-dependent aminotransferase family protein, at 1,272,539 to 1,273,957 _RS21785 ABZR87_RS21790: ABZR87_RS21790 - DUF3005 domain-containing protein, at 1,274,031 to 1,274,486 _RS21790 ABZR87_RS21795: ABZR87_RS21795 - NUDIX domain-containing protein, at 1,274,535 to 1,275,269 _RS21795 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1272.083 kb on - strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.086 kb on + strand, within ABZR87_RS21780at 1272.087 kb on - strand, within ABZR87_RS21780at 1272.087 kb on - strand, within ABZR87_RS21780at 1272.087 kb on - strand, within ABZR87_RS21780at 1272.099 kb on - strand, within ABZR87_RS21780at 1272.156 kb on + strand, within ABZR87_RS21780at 1272.156 kb on + strand, within ABZR87_RS21780at 1272.157 kb on - strand, within ABZR87_RS21780at 1272.217 kb on + strand, within ABZR87_RS21780at 1272.217 kb on + strand, within ABZR87_RS21780at 1272.218 kb on - strand, within ABZR87_RS21780at 1272.218 kb on - strand, within ABZR87_RS21780at 1272.218 kb on - strand, within ABZR87_RS21780at 1272.348 kb on + strandat 1272.348 kb on + strandat 1272.361 kb on + strandat 1272.361 kb on + strandat 1272.361 kb on + strandat 1272.361 kb on + strandat 1272.362 kb on - strandat 1272.408 kb on + strandat 1272.409 kb on - strandat 1272.471 kb on + strandat 1272.472 kb on - strandat 1272.707 kb on + strand, within ABZR87_RS21785at 1272.707 kb on + strand, within ABZR87_RS21785at 1272.707 kb on + strand, within ABZR87_RS21785at 1272.708 kb on - strand, within ABZR87_RS21785at 1272.708 kb on - strand, within ABZR87_RS21785at 1272.708 kb on - strand, within ABZR87_RS21785at 1272.761 kb on + strand, within ABZR87_RS21785at 1272.761 kb on + strand, within ABZR87_RS21785at 1272.835 kb on + strand, within ABZR87_RS21785at 1272.845 kb on + strand, within ABZR87_RS21785at 1272.845 kb on + strand, within ABZR87_RS21785at 1272.980 kb on + strand, within ABZR87_RS21785at 1272.981 kb on - strand, within ABZR87_RS21785at 1273.160 kb on + strand, within ABZR87_RS21785at 1273.160 kb on + strand, within ABZR87_RS21785at 1273.160 kb on + strand, within ABZR87_RS21785at 1273.161 kb on - strand, within ABZR87_RS21785at 1273.163 kb on + strand, within ABZR87_RS21785at 1273.163 kb on + strand, within ABZR87_RS21785at 1273.163 kb on + strand, within ABZR87_RS21785at 1273.164 kb on - strand, within ABZR87_RS21785at 1273.164 kb on - strand, within ABZR87_RS21785at 1273.164 kb on - strand, within ABZR87_RS21785at 1273.466 kb on + strand, within ABZR87_RS21785at 1273.466 kb on + strand, within ABZR87_RS21785at 1273.466 kb on + strand, within ABZR87_RS21785at 1273.466 kb on + strand, within ABZR87_RS21785at 1273.467 kb on - strand, within ABZR87_RS21785at 1273.467 kb on - strand, within ABZR87_RS21785at 1273.467 kb on - strand, within ABZR87_RS21785at 1273.539 kb on + strand, within ABZR87_RS21785at 1273.539 kb on + strand, within ABZR87_RS21785at 1273.539 kb on + strand, within ABZR87_RS21785at 1273.539 kb on + strand, within ABZR87_RS21785at 1273.539 kb on + strand, within ABZR87_RS21785at 1273.539 kb on + strand, within ABZR87_RS21785at 1273.540 kb on - strand, within ABZR87_RS21785at 1273.540 kb on - strand, within ABZR87_RS21785at 1273.540 kb on - strand, within ABZR87_RS21785at 1273.540 kb on - strand, within ABZR87_RS21785at 1273.631 kb on + strand, within ABZR87_RS21785at 1273.640 kb on + strand, within ABZR87_RS21785at 1273.640 kb on + strand, within ABZR87_RS21785at 1273.640 kb on + strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.641 kb on - strand, within ABZR87_RS21785at 1273.836 kb on - strandat 1273.836 kb on - strandat 1273.836 kb on - strandat 1273.836 kb on - strandat 1273.836 kb on - strandat 1273.836 kb on - strandat 1273.887 kb on - strandat 1273.887 kb on - strandat 1273.960 kb on + strandat 1273.961 kb on - strandat 1273.961 kb on - strandat 1274.277 kb on + strand, within ABZR87_RS21790at 1274.277 kb on + strand, within ABZR87_RS21790at 1274.277 kb on + strand, within ABZR87_RS21790at 1274.278 kb on - strand, within ABZR87_RS21790at 1274.278 kb on - strand, within ABZR87_RS21790at 1274.278 kb on - strand, within ABZR87_RS21790at 1274.485 kb on - strandat 1274.630 kb on - strand, within ABZR87_RS21795at 1274.732 kb on - strand, within ABZR87_RS21795at 1274.794 kb on + strand, within ABZR87_RS21795at 1274.795 kb on - strand, within ABZR87_RS21795at 1274.795 kb on - strand, within ABZR87_RS21795at 1274.795 kb on - strand, within ABZR87_RS21795at 1274.795 kb on - strand, within ABZR87_RS21795

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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1,272,083 - ABZR87_RS21780 0.60 -0.0
1,272,086 + ABZR87_RS21780 0.61 -1.6
1,272,086 + ABZR87_RS21780 0.61 -0.1
1,272,086 + ABZR87_RS21780 0.61 -1.6
1,272,086 + ABZR87_RS21780 0.61 +0.5
1,272,086 + ABZR87_RS21780 0.61 -0.2
1,272,086 + ABZR87_RS21780 0.61 +0.7
1,272,086 + ABZR87_RS21780 0.61 -0.0
1,272,087 - ABZR87_RS21780 0.61 +0.6
1,272,087 - ABZR87_RS21780 0.61 +0.6
1,272,087 - ABZR87_RS21780 0.61 +0.2
1,272,099 - ABZR87_RS21780 0.63 +0.1
1,272,156 + ABZR87_RS21780 0.74 -0.8
1,272,156 + ABZR87_RS21780 0.74 +0.9
1,272,157 - ABZR87_RS21780 0.74 -0.5
1,272,217 + ABZR87_RS21780 0.86 -1.2
1,272,217 + ABZR87_RS21780 0.86 -0.9
1,272,218 - ABZR87_RS21780 0.86 +0.2
1,272,218 - ABZR87_RS21780 0.86 +0.8
1,272,218 - ABZR87_RS21780 0.86 +0.1
1,272,348 + -0.2
1,272,348 + +0.5
1,272,361 + -0.2
1,272,361 + +0.3
1,272,361 + -1.2
1,272,361 + +0.0
1,272,362 - +1.0
1,272,408 + -0.5
1,272,409 - -0.7
1,272,471 + -0.3
1,272,472 - -0.6
1,272,707 + ABZR87_RS21785 0.12 +1.1
1,272,707 + ABZR87_RS21785 0.12 +1.0
1,272,707 + ABZR87_RS21785 0.12 -0.0
1,272,708 - ABZR87_RS21785 0.12 +0.8
1,272,708 - ABZR87_RS21785 0.12 -0.9
1,272,708 - ABZR87_RS21785 0.12 -1.7
1,272,761 + ABZR87_RS21785 0.16 +0.2
1,272,761 + ABZR87_RS21785 0.16 +1.3
1,272,835 + ABZR87_RS21785 0.21 -1.5
1,272,845 + ABZR87_RS21785 0.22 -1.3
1,272,845 + ABZR87_RS21785 0.22 +1.8
1,272,980 + ABZR87_RS21785 0.31 -0.4
1,272,981 - ABZR87_RS21785 0.31 +0.6
1,273,160 + ABZR87_RS21785 0.44 -1.0
1,273,160 + ABZR87_RS21785 0.44 -1.4
1,273,160 + ABZR87_RS21785 0.44 -1.6
1,273,161 - ABZR87_RS21785 0.44 +1.3
1,273,163 + ABZR87_RS21785 0.44 -0.5
1,273,163 + ABZR87_RS21785 0.44 -1.1
1,273,163 + ABZR87_RS21785 0.44 +1.5
1,273,164 - ABZR87_RS21785 0.44 -1.7
1,273,164 - ABZR87_RS21785 0.44 +0.1
1,273,164 - ABZR87_RS21785 0.44 -0.5
1,273,466 + ABZR87_RS21785 0.65 +1.1
1,273,466 + ABZR87_RS21785 0.65 +0.7
1,273,466 + ABZR87_RS21785 0.65 +0.5
1,273,466 + ABZR87_RS21785 0.65 +0.6
1,273,467 - ABZR87_RS21785 0.65 -0.2
1,273,467 - ABZR87_RS21785 0.65 +1.0
1,273,467 - ABZR87_RS21785 0.65 +1.0
1,273,539 + ABZR87_RS21785 0.70 -1.3
1,273,539 + ABZR87_RS21785 0.70 +0.7
1,273,539 + ABZR87_RS21785 0.70 -0.8
1,273,539 + ABZR87_RS21785 0.70 -0.8
1,273,539 + ABZR87_RS21785 0.70 -0.9
1,273,539 + ABZR87_RS21785 0.70 +0.1
1,273,540 - ABZR87_RS21785 0.71 +0.4
1,273,540 - ABZR87_RS21785 0.71 +0.0
1,273,540 - ABZR87_RS21785 0.71 -0.4
1,273,540 - ABZR87_RS21785 0.71 -0.7
1,273,631 + ABZR87_RS21785 0.77 -0.1
1,273,640 + ABZR87_RS21785 0.78 +1.9
1,273,640 + ABZR87_RS21785 0.78 -0.1
1,273,640 + ABZR87_RS21785 0.78 -0.0
1,273,641 - ABZR87_RS21785 0.78 +0.8
1,273,641 - ABZR87_RS21785 0.78 -3.2
1,273,641 - ABZR87_RS21785 0.78 +1.4
1,273,641 - ABZR87_RS21785 0.78 -0.1
1,273,641 - ABZR87_RS21785 0.78 +0.7
1,273,641 - ABZR87_RS21785 0.78 -0.8
1,273,641 - ABZR87_RS21785 0.78 -1.7
1,273,641 - ABZR87_RS21785 0.78 -0.1
1,273,836 - -0.7
1,273,836 - +0.1
1,273,836 - +0.9
1,273,836 - -0.3
1,273,836 - +0.1
1,273,836 - +0.3
1,273,887 - -0.1
1,273,887 - -1.0
1,273,960 + +0.3
1,273,961 - +0.1
1,273,961 - -0.2
1,274,277 + ABZR87_RS21790 0.54 +2.7
1,274,277 + ABZR87_RS21790 0.54 +1.1
1,274,277 + ABZR87_RS21790 0.54 -1.2
1,274,278 - ABZR87_RS21790 0.54 -0.9
1,274,278 - ABZR87_RS21790 0.54 +0.4
1,274,278 - ABZR87_RS21790 0.54 -1.3
1,274,485 - +1.1
1,274,630 - ABZR87_RS21795 0.13 -2.6
1,274,732 - ABZR87_RS21795 0.27 -2.6
1,274,794 + ABZR87_RS21795 0.35 -2.6
1,274,795 - ABZR87_RS21795 0.35 -2.7
1,274,795 - ABZR87_RS21795 0.35 -2.3
1,274,795 - ABZR87_RS21795 0.35 -2.7
1,274,795 - ABZR87_RS21795 0.35 -2.0

Or see this region's nucleotide sequence