Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20435 and ABZR87_RS20440 are separated by 270 nucleotides ABZR87_RS20440 and ABZR87_RS20445 are separated by 239 nucleotides ABZR87_RS20445 and ABZR87_RS20450 are separated by 45 nucleotides ABZR87_RS20450 and ABZR87_RS20455 are separated by 59 nucleotides
ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795
_RS20435
ABZR87_RS20440: ABZR87_RS20440 - F0F1 ATP synthase subunit epsilon, at 974,066 to 974,485
_RS20440
ABZR87_RS20445: ABZR87_RS20445 - LysR substrate-binding domain-containing protein, at 974,725 to 975,660
_RS20445
ABZR87_RS20450: ABZR87_RS20450 - HAD family phosphatase, at 975,706 to 976,389
_RS20450
ABZR87_RS20455: ABZR87_RS20455 - TIGR03364 family FAD-dependent oxidoreductase, at 976,449 to 977,669
_RS20455
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 973.980 kb on + strand at 973.981 kb on - strand at 973.992 kb on - strand at 974.440 kb on - strand, within ABZR87_RS20440 at 974.509 kb on - strand at 974.509 kb on - strand at 974.509 kb on - strand at 974.638 kb on + strand at 974.638 kb on + strand at 974.655 kb on + strand at 974.655 kb on + strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.675 kb on - strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.851 kb on + strand, within ABZR87_RS20445 at 974.851 kb on + strand, within ABZR87_RS20445 at 974.851 kb on + strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 975.025 kb on + strand, within ABZR87_RS20445 at 975.025 kb on + strand, within ABZR87_RS20445 at 975.025 kb on + strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.029 kb on - strand, within ABZR87_RS20445 at 975.029 kb on - strand, within ABZR87_RS20445 at 975.259 kb on - strand, within ABZR87_RS20445 at 975.397 kb on + strand, within ABZR87_RS20445 at 975.397 kb on + strand, within ABZR87_RS20445 at 975.511 kb on + strand, within ABZR87_RS20445 at 975.517 kb on + strand, within ABZR87_RS20445 at 975.518 kb on - strand, within ABZR87_RS20445 at 975.518 kb on - strand, within ABZR87_RS20445 at 975.630 kb on + strand at 975.659 kb on - strand at 975.705 kb on + strand at 975.706 kb on - strand at 975.706 kb on - strand at 975.706 kb on - strand at 976.054 kb on + strand, within ABZR87_RS20450 at 976.259 kb on - strand, within ABZR87_RS20450 at 976.526 kb on + strand at 976.527 kb on - strand at 976.527 kb on - strand at 976.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 973,980 + -0.6 973,981 - -0.8 973,992 - +0.5 974,440 - ABZR87_RS20440 0.89 +0.6 974,509 - +0.7 974,509 - +1.0 974,509 - +1.0 974,638 + -0.2 974,638 + -0.9 974,655 + -0.6 974,655 + -1.0 974,656 - +0.4 974,656 - +0.8 974,656 - -0.2 974,656 - -1.4 974,674 + -0.2 974,674 + -0.8 974,674 + -0.4 974,674 + +0.1 974,675 - +1.0 974,738 + +0.5 974,738 + -2.7 974,738 + -1.6 974,738 + +0.5 974,738 + +0.8 974,738 + -2.6 974,738 + +1.1 974,739 - -0.9 974,739 - +0.8 974,739 - -0.4 974,739 - -1.3 974,739 - +0.5 974,739 - -0.1 974,851 + ABZR87_RS20445 0.13 +0.4 974,851 + ABZR87_RS20445 0.13 +0.1 974,851 + ABZR87_RS20445 0.13 +1.7 974,852 - ABZR87_RS20445 0.14 +1.0 974,852 - ABZR87_RS20445 0.14 -0.4 974,852 - ABZR87_RS20445 0.14 +0.2 974,852 - ABZR87_RS20445 0.14 -0.2 974,852 - ABZR87_RS20445 0.14 +0.5 975,025 + ABZR87_RS20445 0.32 -0.6 975,025 + ABZR87_RS20445 0.32 +1.0 975,025 + ABZR87_RS20445 0.32 +0.0 975,026 - ABZR87_RS20445 0.32 +0.6 975,026 - ABZR87_RS20445 0.32 +0.2 975,026 - ABZR87_RS20445 0.32 +0.3 975,026 - ABZR87_RS20445 0.32 +1.1 975,028 + ABZR87_RS20445 0.32 -0.9 975,028 + ABZR87_RS20445 0.32 -0.7 975,028 + ABZR87_RS20445 0.32 -2.2 975,028 + ABZR87_RS20445 0.32 +0.1 975,028 + ABZR87_RS20445 0.32 -0.6 975,028 + ABZR87_RS20445 0.32 -0.3 975,028 + ABZR87_RS20445 0.32 +0.7 975,029 - ABZR87_RS20445 0.32 +0.7 975,029 - ABZR87_RS20445 0.32 -1.3 975,259 - ABZR87_RS20445 0.57 +0.3 975,397 + ABZR87_RS20445 0.72 -1.2 975,397 + ABZR87_RS20445 0.72 +1.1 975,511 + ABZR87_RS20445 0.84 -1.7 975,517 + ABZR87_RS20445 0.85 +1.0 975,518 - ABZR87_RS20445 0.85 +0.3 975,518 - ABZR87_RS20445 0.85 +3.2 975,630 + -1.4 975,659 - -1.0 975,705 + -0.3 975,706 - -0.4 975,706 - +1.0 975,706 - -0.9 976,054 + ABZR87_RS20450 0.51 +1.3 976,259 - ABZR87_RS20450 0.81 +0.5 976,526 + -0.1 976,527 - +1.7 976,527 - -1.5 976,527 - -0.3
Or see this region's nucleotide sequence