Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19545 and ABZR87_RS19550 overlap by 8 nucleotides ABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotides ABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotides ABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotides
ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539
_RS19545
ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458
_RS19550
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394
_RS19560
ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720
_RS19565
Position (kb) 759
760
761 Strain fitness (log2 ratio) -1
0
1
2 at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.538 kb on - strand at 758.679 kb on + strand, within ABZR87_RS19550 at 758.784 kb on + strand, within ABZR87_RS19550 at 758.785 kb on - strand, within ABZR87_RS19550 at 758.827 kb on + strand, within ABZR87_RS19550 at 758.828 kb on - strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.875 kb on - strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.456 kb on + strand at 759.457 kb on - strand at 759.457 kb on - strand at 759.804 kb on + strand, within ABZR87_RS19555 at 759.805 kb on - strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.940 kb on - strand, within ABZR87_RS19555 at 759.950 kb on + strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 760.181 kb on + strand, within ABZR87_RS19555 at 760.223 kb on + strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.442 kb on + strand at 760.442 kb on + strand at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.699 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.721 kb on - strand, within ABZR87_RS19560
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 758,537 + +0.3 758,537 + +1.1 758,537 + +0.8 758,537 + +0.3 758,538 - +2.0 758,679 + ABZR87_RS19550 0.16 +0.2 758,784 + ABZR87_RS19550 0.27 +1.7 758,785 - ABZR87_RS19550 0.27 +0.1 758,827 + ABZR87_RS19550 0.32 +1.2 758,828 - ABZR87_RS19550 0.32 +0.9 758,874 + ABZR87_RS19550 0.37 +0.2 758,874 + ABZR87_RS19550 0.37 +0.6 758,874 + ABZR87_RS19550 0.37 +0.7 758,875 - ABZR87_RS19550 0.37 -0.9 759,348 + ABZR87_RS19550 0.88 +0.4 759,348 + ABZR87_RS19550 0.88 +0.5 759,348 + ABZR87_RS19550 0.88 +0.3 759,348 + ABZR87_RS19550 0.88 +1.3 759,348 + ABZR87_RS19550 0.88 +0.5 759,348 + ABZR87_RS19550 0.88 +1.0 759,348 + ABZR87_RS19550 0.88 +0.6 759,349 - ABZR87_RS19550 0.88 +0.9 759,349 - ABZR87_RS19550 0.88 +0.8 759,349 - ABZR87_RS19550 0.88 +2.3 759,349 - ABZR87_RS19550 0.88 +1.9 759,349 - ABZR87_RS19550 0.88 +1.4 759,349 - ABZR87_RS19550 0.88 +2.0 759,349 - ABZR87_RS19550 0.88 +0.1 759,349 - ABZR87_RS19550 0.88 +2.0 759,456 + +2.1 759,457 - +1.5 759,457 - +1.8 759,804 + ABZR87_RS19555 0.34 +0.2 759,805 - ABZR87_RS19555 0.34 +1.2 759,842 + ABZR87_RS19555 0.38 -0.5 759,842 + ABZR87_RS19555 0.38 +0.5 759,843 - ABZR87_RS19555 0.38 +0.6 759,843 - ABZR87_RS19555 0.38 -1.7 759,940 - ABZR87_RS19555 0.48 -0.1 759,950 + ABZR87_RS19555 0.49 -0.9 759,951 - ABZR87_RS19555 0.49 +1.7 759,951 - ABZR87_RS19555 0.49 +1.0 759,951 - ABZR87_RS19555 0.49 +0.0 759,951 - ABZR87_RS19555 0.49 +0.9 759,951 - ABZR87_RS19555 0.49 +0.9 759,951 - ABZR87_RS19555 0.49 +1.4 760,181 + ABZR87_RS19555 0.72 +1.2 760,223 + ABZR87_RS19555 0.76 +2.1 760,224 - ABZR87_RS19555 0.76 -0.8 760,224 - ABZR87_RS19555 0.76 +1.5 760,442 + -0.2 760,442 + +0.4 760,678 + ABZR87_RS19560 0.23 +0.9 760,678 + ABZR87_RS19560 0.23 +0.8 760,678 + ABZR87_RS19560 0.23 +1.7 760,679 - ABZR87_RS19560 0.24 +2.0 760,679 - ABZR87_RS19560 0.24 +1.6 760,679 - ABZR87_RS19560 0.24 +1.0 760,681 + ABZR87_RS19560 0.24 +1.2 760,681 + ABZR87_RS19560 0.24 +0.7 760,681 + ABZR87_RS19560 0.24 +0.5 760,682 - ABZR87_RS19560 0.24 +0.9 760,682 - ABZR87_RS19560 0.24 +2.0 760,699 - ABZR87_RS19560 0.26 +1.5 760,709 - ABZR87_RS19560 0.27 +1.1 760,709 - ABZR87_RS19560 0.27 +2.1 760,721 - ABZR87_RS19560 0.28 +1.1
Or see this region's nucleotide sequence