Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19535

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19525 and ABZR87_RS19530 are separated by 76 nucleotidesABZR87_RS19530 and ABZR87_RS19535 overlap by 8 nucleotidesABZR87_RS19535 and ABZR87_RS19540 are separated by 9 nucleotides ABZR87_RS19525: ABZR87_RS19525 - TadE/TadG family type IV pilus assembly protein, at 752,971 to 753,474 _RS19525 ABZR87_RS19530: ABZR87_RS19530 - Flp pilus assembly protein CpaB, at 753,551 to 754,477 _RS19530 ABZR87_RS19535: ABZR87_RS19535 - type II and III secretion system protein family protein, at 754,470 to 755,834 _RS19535 ABZR87_RS19540: ABZR87_RS19540 - CpaE family protein, at 755,844 to 757,187 _RS19540 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 753.472 kb on + strandat 753.472 kb on + strandat 753.472 kb on + strandat 753.472 kb on + strandat 753.473 kb on - strandat 753.473 kb on - strandat 753.473 kb on - strandat 753.536 kb on - strandat 753.619 kb on - strandat 753.681 kb on + strand, within ABZR87_RS19530at 753.681 kb on + strand, within ABZR87_RS19530at 753.681 kb on + strand, within ABZR87_RS19530at 753.681 kb on + strand, within ABZR87_RS19530at 753.681 kb on + strand, within ABZR87_RS19530at 753.681 kb on + strand, within ABZR87_RS19530at 753.681 kb on + strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.682 kb on - strand, within ABZR87_RS19530at 753.683 kb on + strand, within ABZR87_RS19530at 753.698 kb on - strand, within ABZR87_RS19530at 753.698 kb on - strand, within ABZR87_RS19530at 753.962 kb on + strand, within ABZR87_RS19530at 753.962 kb on + strand, within ABZR87_RS19530at 753.963 kb on - strand, within ABZR87_RS19530at 753.963 kb on - strand, within ABZR87_RS19530at 754.507 kb on + strandat 754.507 kb on + strandat 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.770 kb on + strand, within ABZR87_RS19535at 754.771 kb on - strand, within ABZR87_RS19535at 754.771 kb on - strand, within ABZR87_RS19535at 754.771 kb on - strand, within ABZR87_RS19535at 754.771 kb on - strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.869 kb on + strand, within ABZR87_RS19535at 755.343 kb on + strand, within ABZR87_RS19535at 755.343 kb on + strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.501 kb on + strand, within ABZR87_RS19535at 755.567 kb on - strand, within ABZR87_RS19535at 755.637 kb on + strand, within ABZR87_RS19535at 755.637 kb on + strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.672 kb on + strand, within ABZR87_RS19535at 755.673 kb on - strand, within ABZR87_RS19535at 755.832 kb on + strandat 755.832 kb on + strandat 755.833 kb on - strandat 755.833 kb on - strandat 755.833 kb on - strandat 755.850 kb on + strandat 755.850 kb on + strandat 755.850 kb on + strandat 755.850 kb on + strandat 755.851 kb on - strandat 755.851 kb on - strandat 755.851 kb on - strandat 755.851 kb on - strandat 756.058 kb on + strand, within ABZR87_RS19540at 756.058 kb on + strand, within ABZR87_RS19540at 756.058 kb on + strand, within ABZR87_RS19540at 756.460 kb on - strand, within ABZR87_RS19540at 756.460 kb on - strand, within ABZR87_RS19540

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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753,472 + +0.9
753,472 + +0.0
753,472 + -0.3
753,472 + -0.2
753,473 - +1.3
753,473 - +0.6
753,473 - +0.9
753,536 - +0.8
753,619 - +0.5
753,681 + ABZR87_RS19530 0.14 +0.1
753,681 + ABZR87_RS19530 0.14 +1.3
753,681 + ABZR87_RS19530 0.14 -0.8
753,681 + ABZR87_RS19530 0.14 +1.2
753,681 + ABZR87_RS19530 0.14 +2.3
753,681 + ABZR87_RS19530 0.14 +2.4
753,681 + ABZR87_RS19530 0.14 +1.4
753,682 - ABZR87_RS19530 0.14 +4.7
753,682 - ABZR87_RS19530 0.14 +1.1
753,682 - ABZR87_RS19530 0.14 +1.4
753,682 - ABZR87_RS19530 0.14 +0.6
753,682 - ABZR87_RS19530 0.14 +0.8
753,682 - ABZR87_RS19530 0.14 +1.2
753,682 - ABZR87_RS19530 0.14 -0.4
753,683 + ABZR87_RS19530 0.14 +1.0
753,698 - ABZR87_RS19530 0.16 -0.9
753,698 - ABZR87_RS19530 0.16 +0.5
753,962 + ABZR87_RS19530 0.44 +2.3
753,962 + ABZR87_RS19530 0.44 +2.2
753,963 - ABZR87_RS19530 0.44 -0.8
753,963 - ABZR87_RS19530 0.44 +0.2
754,507 + +0.6
754,507 + +0.2
754,770 + ABZR87_RS19535 0.22 +1.5
754,770 + ABZR87_RS19535 0.22 -0.3
754,770 + ABZR87_RS19535 0.22 -1.0
754,770 + ABZR87_RS19535 0.22 +1.7
754,770 + ABZR87_RS19535 0.22 +1.2
754,770 + ABZR87_RS19535 0.22 +0.5
754,770 + ABZR87_RS19535 0.22 -0.3
754,770 + ABZR87_RS19535 0.22 -0.5
754,771 - ABZR87_RS19535 0.22 -0.3
754,771 - ABZR87_RS19535 0.22 +1.1
754,771 - ABZR87_RS19535 0.22 +0.1
754,771 - ABZR87_RS19535 0.22 -0.6
754,867 + ABZR87_RS19535 0.29 +1.8
754,867 + ABZR87_RS19535 0.29 +0.7
754,867 + ABZR87_RS19535 0.29 +0.6
754,867 + ABZR87_RS19535 0.29 +1.0
754,868 - ABZR87_RS19535 0.29 +2.1
754,868 - ABZR87_RS19535 0.29 +0.6
754,868 - ABZR87_RS19535 0.29 -0.7
754,868 - ABZR87_RS19535 0.29 +0.5
754,868 - ABZR87_RS19535 0.29 +0.6
754,868 - ABZR87_RS19535 0.29 +1.2
754,868 - ABZR87_RS19535 0.29 +0.8
754,868 - ABZR87_RS19535 0.29 +0.6
754,868 - ABZR87_RS19535 0.29 +1.6
754,868 - ABZR87_RS19535 0.29 +1.6
754,868 - ABZR87_RS19535 0.29 -0.8
754,868 - ABZR87_RS19535 0.29 +0.9
754,869 + ABZR87_RS19535 0.29 +0.1
755,343 + ABZR87_RS19535 0.64 -0.1
755,343 + ABZR87_RS19535 0.64 +1.5
755,344 - ABZR87_RS19535 0.64 +0.3
755,344 - ABZR87_RS19535 0.64 +2.2
755,344 - ABZR87_RS19535 0.64 +1.7
755,344 - ABZR87_RS19535 0.64 +0.4
755,501 + ABZR87_RS19535 0.76 +0.9
755,567 - ABZR87_RS19535 0.80 +0.8
755,637 + ABZR87_RS19535 0.85 +1.0
755,637 + ABZR87_RS19535 0.85 +0.9
755,638 - ABZR87_RS19535 0.86 -0.2
755,638 - ABZR87_RS19535 0.86 +0.2
755,638 - ABZR87_RS19535 0.86 -0.3
755,638 - ABZR87_RS19535 0.86 +0.2
755,638 - ABZR87_RS19535 0.86 +1.6
755,672 + ABZR87_RS19535 0.88 +0.4
755,673 - ABZR87_RS19535 0.88 +2.5
755,832 + +0.4
755,832 + +0.3
755,833 - +1.2
755,833 - +0.4
755,833 - +1.3
755,850 + +1.0
755,850 + +0.3
755,850 + +1.0
755,850 + -1.0
755,851 - +1.0
755,851 - +2.8
755,851 - -1.9
755,851 - +0.2
756,058 + ABZR87_RS19540 0.16 +0.9
756,058 + ABZR87_RS19540 0.16 -0.0
756,058 + ABZR87_RS19540 0.16 +0.6
756,460 - ABZR87_RS19540 0.46 +0.0
756,460 - ABZR87_RS19540 0.46 +0.2

Or see this region's nucleotide sequence