Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19400

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19395 and ABZR87_RS19400 are separated by 25 nucleotidesABZR87_RS19400 and ABZR87_RS19405 are separated by 47 nucleotides ABZR87_RS19395: ABZR87_RS19395 - efflux transporter outer membrane subunit, at 718,309 to 719,859 _RS19395 ABZR87_RS19400: ABZR87_RS19400 - efflux RND transporter permease subunit, at 719,885 to 723,091 _RS19400 ABZR87_RS19405: ABZR87_RS19405 - efflux RND transporter periplasmic adaptor subunit, at 723,139 to 724,449 _RS19405 Position (kb) 719 720 721 722 723 724Strain fitness (log2 ratio) -1 0 1 2at 719.053 kb on + strand, within ABZR87_RS19395at 719.228 kb on + strand, within ABZR87_RS19395at 719.228 kb on + strand, within ABZR87_RS19395at 719.273 kb on + strand, within ABZR87_RS19395at 719.274 kb on - strand, within ABZR87_RS19395at 719.274 kb on - strand, within ABZR87_RS19395at 719.351 kb on + strand, within ABZR87_RS19395at 719.351 kb on + strand, within ABZR87_RS19395at 719.351 kb on + strand, within ABZR87_RS19395at 719.351 kb on + strand, within ABZR87_RS19395at 719.352 kb on - strand, within ABZR87_RS19395at 719.352 kb on - strand, within ABZR87_RS19395at 719.352 kb on - strand, within ABZR87_RS19395at 719.747 kb on + strandat 719.747 kb on + strandat 719.859 kb on + strandat 719.860 kb on - strandat 719.860 kb on - strandat 719.886 kb on + strandat 719.886 kb on + strandat 719.886 kb on + strandat 719.886 kb on + strandat 719.994 kb on + strandat 719.995 kb on - strandat 719.995 kb on - strandat 720.250 kb on + strand, within ABZR87_RS19400at 720.250 kb on + strand, within ABZR87_RS19400at 720.251 kb on - strand, within ABZR87_RS19400at 720.394 kb on - strand, within ABZR87_RS19400at 720.394 kb on - strand, within ABZR87_RS19400at 720.477 kb on + strand, within ABZR87_RS19400at 720.477 kb on + strand, within ABZR87_RS19400at 720.615 kb on + strand, within ABZR87_RS19400at 720.765 kb on + strand, within ABZR87_RS19400at 720.766 kb on - strand, within ABZR87_RS19400at 720.766 kb on - strand, within ABZR87_RS19400at 720.813 kb on + strand, within ABZR87_RS19400at 720.813 kb on + strand, within ABZR87_RS19400at 720.814 kb on - strand, within ABZR87_RS19400at 720.814 kb on - strand, within ABZR87_RS19400at 720.912 kb on + strand, within ABZR87_RS19400at 720.913 kb on - strand, within ABZR87_RS19400at 720.913 kb on - strand, within ABZR87_RS19400at 721.104 kb on + strand, within ABZR87_RS19400at 721.104 kb on + strand, within ABZR87_RS19400at 721.105 kb on - strand, within ABZR87_RS19400at 721.105 kb on - strand, within ABZR87_RS19400at 721.105 kb on - strand, within ABZR87_RS19400at 721.356 kb on + strand, within ABZR87_RS19400at 721.356 kb on + strand, within ABZR87_RS19400at 721.357 kb on - strand, within ABZR87_RS19400at 721.434 kb on + strand, within ABZR87_RS19400at 721.434 kb on + strand, within ABZR87_RS19400at 721.435 kb on - strand, within ABZR87_RS19400at 721.488 kb on + strand, within ABZR87_RS19400at 721.489 kb on - strand, within ABZR87_RS19400at 721.791 kb on + strand, within ABZR87_RS19400at 721.791 kb on + strand, within ABZR87_RS19400at 721.791 kb on + strand, within ABZR87_RS19400at 721.792 kb on - strand, within ABZR87_RS19400at 721.792 kb on - strand, within ABZR87_RS19400at 721.792 kb on - strand, within ABZR87_RS19400at 721.792 kb on - strand, within ABZR87_RS19400at 721.812 kb on - strand, within ABZR87_RS19400at 722.075 kb on - strand, within ABZR87_RS19400at 722.103 kb on + strand, within ABZR87_RS19400at 722.104 kb on - strand, within ABZR87_RS19400at 722.104 kb on - strand, within ABZR87_RS19400at 722.104 kb on - strand, within ABZR87_RS19400at 722.259 kb on + strand, within ABZR87_RS19400at 722.259 kb on + strand, within ABZR87_RS19400at 722.301 kb on + strand, within ABZR87_RS19400at 722.447 kb on + strand, within ABZR87_RS19400at 722.447 kb on + strand, within ABZR87_RS19400at 722.447 kb on + strand, within ABZR87_RS19400at 722.448 kb on - strand, within ABZR87_RS19400at 722.448 kb on - strand, within ABZR87_RS19400at 722.448 kb on - strand, within ABZR87_RS19400at 722.538 kb on + strand, within ABZR87_RS19400at 722.539 kb on - strand, within ABZR87_RS19400at 722.616 kb on + strand, within ABZR87_RS19400at 722.616 kb on + strand, within ABZR87_RS19400at 722.617 kb on - strand, within ABZR87_RS19400at 722.617 kb on - strand, within ABZR87_RS19400at 722.617 kb on - strand, within ABZR87_RS19400at 722.628 kb on + strand, within ABZR87_RS19400at 722.628 kb on + strand, within ABZR87_RS19400at 722.629 kb on - strand, within ABZR87_RS19400at 722.640 kb on + strand, within ABZR87_RS19400at 722.640 kb on + strand, within ABZR87_RS19400at 722.856 kb on + strandat 722.856 kb on + strandat 722.856 kb on + strandat 722.856 kb on + strandat 722.856 kb on + strandat 722.856 kb on + strandat 722.857 kb on - strandat 722.857 kb on - strandat 723.310 kb on - strand, within ABZR87_RS19405at 723.452 kb on + strand, within ABZR87_RS19405at 723.452 kb on + strand, within ABZR87_RS19405at 723.575 kb on + strand, within ABZR87_RS19405at 723.689 kb on + strand, within ABZR87_RS19405at 723.716 kb on + strand, within ABZR87_RS19405at 723.717 kb on - strand, within ABZR87_RS19405at 723.755 kb on + strand, within ABZR87_RS19405at 723.765 kb on - strand, within ABZR87_RS19405at 723.794 kb on + strand, within ABZR87_RS19405at 723.794 kb on + strand, within ABZR87_RS19405at 723.794 kb on + strand, within ABZR87_RS19405at 723.794 kb on + strand, within ABZR87_RS19405at 723.795 kb on - strand, within ABZR87_RS19405at 723.795 kb on - strand, within ABZR87_RS19405at 723.795 kb on - strand, within ABZR87_RS19405at 723.917 kb on + strand, within ABZR87_RS19405at 723.917 kb on + strand, within ABZR87_RS19405at 723.918 kb on - strand, within ABZR87_RS19405at 723.918 kb on - strand, within ABZR87_RS19405at 723.918 kb on - strand, within ABZR87_RS19405at 723.918 kb on - strand, within ABZR87_RS19405at 724.073 kb on + strand, within ABZR87_RS19405

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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719,053 + ABZR87_RS19395 0.48 +0.7
719,228 + ABZR87_RS19395 0.59 +2.3
719,228 + ABZR87_RS19395 0.59 +0.7
719,273 + ABZR87_RS19395 0.62 +0.1
719,274 - ABZR87_RS19395 0.62 +0.4
719,274 - ABZR87_RS19395 0.62 -0.1
719,351 + ABZR87_RS19395 0.67 -0.2
719,351 + ABZR87_RS19395 0.67 -0.8
719,351 + ABZR87_RS19395 0.67 +0.2
719,351 + ABZR87_RS19395 0.67 -0.3
719,352 - ABZR87_RS19395 0.67 +2.4
719,352 - ABZR87_RS19395 0.67 -0.9
719,352 - ABZR87_RS19395 0.67 +0.5
719,747 + +0.4
719,747 + -0.6
719,859 + -0.4
719,860 - -0.8
719,860 - +0.1
719,886 + -0.9
719,886 + -0.1
719,886 + +1.8
719,886 + -0.7
719,994 + -0.4
719,995 - +0.4
719,995 - +0.6
720,250 + ABZR87_RS19400 0.11 +0.3
720,250 + ABZR87_RS19400 0.11 +1.2
720,251 - ABZR87_RS19400 0.11 +0.6
720,394 - ABZR87_RS19400 0.16 +0.9
720,394 - ABZR87_RS19400 0.16 -0.4
720,477 + ABZR87_RS19400 0.18 -0.4
720,477 + ABZR87_RS19400 0.18 -0.6
720,615 + ABZR87_RS19400 0.23 -0.2
720,765 + ABZR87_RS19400 0.27 +0.2
720,766 - ABZR87_RS19400 0.27 -0.1
720,766 - ABZR87_RS19400 0.27 -1.2
720,813 + ABZR87_RS19400 0.29 +0.9
720,813 + ABZR87_RS19400 0.29 +1.6
720,814 - ABZR87_RS19400 0.29 -0.1
720,814 - ABZR87_RS19400 0.29 +0.2
720,912 + ABZR87_RS19400 0.32 -1.3
720,913 - ABZR87_RS19400 0.32 +0.9
720,913 - ABZR87_RS19400 0.32 -1.7
721,104 + ABZR87_RS19400 0.38 +1.2
721,104 + ABZR87_RS19400 0.38 -0.9
721,105 - ABZR87_RS19400 0.38 +0.4
721,105 - ABZR87_RS19400 0.38 -1.5
721,105 - ABZR87_RS19400 0.38 -0.2
721,356 + ABZR87_RS19400 0.46 +0.7
721,356 + ABZR87_RS19400 0.46 +0.1
721,357 - ABZR87_RS19400 0.46 +0.4
721,434 + ABZR87_RS19400 0.48 +0.6
721,434 + ABZR87_RS19400 0.48 +0.9
721,435 - ABZR87_RS19400 0.48 +1.4
721,488 + ABZR87_RS19400 0.50 -0.2
721,489 - ABZR87_RS19400 0.50 -0.2
721,791 + ABZR87_RS19400 0.59 -0.5
721,791 + ABZR87_RS19400 0.59 -0.9
721,791 + ABZR87_RS19400 0.59 -0.5
721,792 - ABZR87_RS19400 0.59 +0.1
721,792 - ABZR87_RS19400 0.59 +0.3
721,792 - ABZR87_RS19400 0.59 -0.1
721,792 - ABZR87_RS19400 0.59 +2.1
721,812 - ABZR87_RS19400 0.60 +1.0
722,075 - ABZR87_RS19400 0.68 +2.3
722,103 + ABZR87_RS19400 0.69 -0.3
722,104 - ABZR87_RS19400 0.69 +0.6
722,104 - ABZR87_RS19400 0.69 +0.2
722,104 - ABZR87_RS19400 0.69 +0.9
722,259 + ABZR87_RS19400 0.74 -0.1
722,259 + ABZR87_RS19400 0.74 -0.1
722,301 + ABZR87_RS19400 0.75 +1.3
722,447 + ABZR87_RS19400 0.80 -0.3
722,447 + ABZR87_RS19400 0.80 -1.2
722,447 + ABZR87_RS19400 0.80 +0.4
722,448 - ABZR87_RS19400 0.80 +0.5
722,448 - ABZR87_RS19400 0.80 +0.4
722,448 - ABZR87_RS19400 0.80 +0.7
722,538 + ABZR87_RS19400 0.83 -0.5
722,539 - ABZR87_RS19400 0.83 -0.6
722,616 + ABZR87_RS19400 0.85 +0.4
722,616 + ABZR87_RS19400 0.85 -1.0
722,617 - ABZR87_RS19400 0.85 +1.1
722,617 - ABZR87_RS19400 0.85 +0.2
722,617 - ABZR87_RS19400 0.85 -0.0
722,628 + ABZR87_RS19400 0.86 +0.4
722,628 + ABZR87_RS19400 0.86 +0.9
722,629 - ABZR87_RS19400 0.86 -0.9
722,640 + ABZR87_RS19400 0.86 +0.5
722,640 + ABZR87_RS19400 0.86 -1.2
722,856 + -0.1
722,856 + -0.1
722,856 + +0.3
722,856 + +1.2
722,856 + -0.2
722,856 + -0.0
722,857 - +0.1
722,857 - -0.6
723,310 - ABZR87_RS19405 0.13 +0.4
723,452 + ABZR87_RS19405 0.24 +0.4
723,452 + ABZR87_RS19405 0.24 -0.7
723,575 + ABZR87_RS19405 0.33 +0.7
723,689 + ABZR87_RS19405 0.42 +1.3
723,716 + ABZR87_RS19405 0.44 -1.4
723,717 - ABZR87_RS19405 0.44 +1.4
723,755 + ABZR87_RS19405 0.47 +0.3
723,765 - ABZR87_RS19405 0.48 +0.2
723,794 + ABZR87_RS19405 0.50 -1.0
723,794 + ABZR87_RS19405 0.50 +0.0
723,794 + ABZR87_RS19405 0.50 +0.6
723,794 + ABZR87_RS19405 0.50 -0.5
723,795 - ABZR87_RS19405 0.50 -0.3
723,795 - ABZR87_RS19405 0.50 -0.8
723,795 - ABZR87_RS19405 0.50 -0.1
723,917 + ABZR87_RS19405 0.59 +0.4
723,917 + ABZR87_RS19405 0.59 -0.8
723,918 - ABZR87_RS19405 0.59 +0.4
723,918 - ABZR87_RS19405 0.59 -0.5
723,918 - ABZR87_RS19405 0.59 +1.1
723,918 - ABZR87_RS19405 0.59 -0.1
724,073 + ABZR87_RS19405 0.71 -0.8

Or see this region's nucleotide sequence