Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19360 and ABZR87_RS19365 are separated by 21 nucleotides ABZR87_RS19365 and ABZR87_RS19370 overlap by 4 nucleotides
ABZR87_RS19360: ABZR87_RS19360 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 709,911 to 711,062
_RS19360
ABZR87_RS19365: ABZR87_RS19365 - glycosyltransferase, at 711,084 to 712,409
_RS19365
ABZR87_RS19370: ABZR87_RS19370 - hypothetical protein, at 712,406 to 713,449
_RS19370
Position (kb) 711
712
713 Strain fitness (log2 ratio) -1
0
1
2 at 710.185 kb on + strand, within ABZR87_RS19360 at 710.631 kb on + strand, within ABZR87_RS19360 at 710.722 kb on - strand, within ABZR87_RS19360 at 710.722 kb on - strand, within ABZR87_RS19360 at 710.923 kb on - strand, within ABZR87_RS19360 at 711.165 kb on + strand at 711.211 kb on - strand at 711.522 kb on + strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.666 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.840 kb on + strand, within ABZR87_RS19365 at 711.861 kb on + strand, within ABZR87_RS19365 at 712.074 kb on + strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.132 kb on - strand, within ABZR87_RS19365 at 712.132 kb on - strand, within ABZR87_RS19365 at 712.183 kb on - strand, within ABZR87_RS19365 at 712.183 kb on - strand, within ABZR87_RS19365 at 712.629 kb on - strand, within ABZR87_RS19370 at 712.794 kb on - strand, within ABZR87_RS19370 at 713.132 kb on + strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 710,185 + ABZR87_RS19360 0.24 -0.0 710,631 + ABZR87_RS19360 0.62 +0.2 710,722 - ABZR87_RS19360 0.70 -1.3 710,722 - ABZR87_RS19360 0.70 +0.2 710,923 - ABZR87_RS19360 0.88 -0.1 711,165 + +2.3 711,211 - +0.0 711,522 + ABZR87_RS19365 0.33 +1.0 711,523 - ABZR87_RS19365 0.33 +0.7 711,523 - ABZR87_RS19365 0.33 +0.1 711,523 - ABZR87_RS19365 0.33 +0.1 711,666 + ABZR87_RS19365 0.44 +0.1 711,714 + ABZR87_RS19365 0.48 -1.4 711,714 + ABZR87_RS19365 0.48 -1.0 711,840 + ABZR87_RS19365 0.57 -0.8 711,861 + ABZR87_RS19365 0.59 -0.9 712,074 + ABZR87_RS19365 0.75 +0.5 712,075 - ABZR87_RS19365 0.75 +0.3 712,075 - ABZR87_RS19365 0.75 -1.3 712,075 - ABZR87_RS19365 0.75 -0.7 712,075 - ABZR87_RS19365 0.75 +2.2 712,132 - ABZR87_RS19365 0.79 -1.1 712,132 - ABZR87_RS19365 0.79 -1.0 712,183 - ABZR87_RS19365 0.83 +0.4 712,183 - ABZR87_RS19365 0.83 -0.7 712,629 - ABZR87_RS19370 0.21 -0.7 712,794 - ABZR87_RS19370 0.37 +1.2 713,132 + ABZR87_RS19370 0.70 -0.0 713,133 - ABZR87_RS19370 0.70 +0.4 713,133 - ABZR87_RS19370 0.70 +0.6
Or see this region's nucleotide sequence