Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19060

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19055 and ABZR87_RS19060 overlap by 7 nucleotidesABZR87_RS19060 and ABZR87_RS19065 are separated by 5 nucleotidesABZR87_RS19065 and ABZR87_RS19070 are separated by 23 nucleotides ABZR87_RS19055: ABZR87_RS19055 - LysR family transcriptional regulator, at 637,440 to 638,411 _RS19055 ABZR87_RS19060: ABZR87_RS19060 - glyoxylate/hydroxypyruvate reductase A, at 638,405 to 639,331 _RS19060 ABZR87_RS19065: ABZR87_RS19065 - class II aldolase/adducin family protein, at 639,337 to 640,137 _RS19065 ABZR87_RS19070: ABZR87_RS19070 - MFS transporter, at 640,161 to 641,480 _RS19070 Position (kb) 638 639 640Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 637.417 kb on + strandat 637.417 kb on + strandat 637.417 kb on + strandat 637.418 kb on - strandat 637.418 kb on - strandat 637.464 kb on + strandat 637.464 kb on + strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.692 kb on + strand, within ABZR87_RS19055at 637.692 kb on + strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.794 kb on + strand, within ABZR87_RS19055at 637.794 kb on + strand, within ABZR87_RS19055at 637.912 kb on + strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.972 kb on - strand, within ABZR87_RS19055at 637.972 kb on - strand, within ABZR87_RS19055at 637.992 kb on + strand, within ABZR87_RS19055at 637.992 kb on + strand, within ABZR87_RS19055at 638.296 kb on + strand, within ABZR87_RS19055at 638.297 kb on - strand, within ABZR87_RS19055at 638.297 kb on - strand, within ABZR87_RS19055at 638.374 kb on - strandat 638.409 kb on + strandat 638.409 kb on + strandat 638.483 kb on + strandat 638.483 kb on + strandat 638.484 kb on - strandat 638.484 kb on - strandat 638.484 kb on - strandat 638.767 kb on + strand, within ABZR87_RS19060at 638.767 kb on + strand, within ABZR87_RS19060at 638.768 kb on - strand, within ABZR87_RS19060at 638.768 kb on - strand, within ABZR87_RS19060at 638.811 kb on + strand, within ABZR87_RS19060at 638.811 kb on + strand, within ABZR87_RS19060at 639.237 kb on + strand, within ABZR87_RS19060at 639.238 kb on - strand, within ABZR87_RS19060at 639.530 kb on + strand, within ABZR87_RS19065at 639.530 kb on + strand, within ABZR87_RS19065at 639.530 kb on + strand, within ABZR87_RS19065at 639.665 kb on + strand, within ABZR87_RS19065at 639.665 kb on + strand, within ABZR87_RS19065at 639.665 kb on + strand, within ABZR87_RS19065at 639.666 kb on - strand, within ABZR87_RS19065at 639.666 kb on - strand, within ABZR87_RS19065at 639.674 kb on + strand, within ABZR87_RS19065at 639.675 kb on - strand, within ABZR87_RS19065at 639.690 kb on - strand, within ABZR87_RS19065at 639.690 kb on - strand, within ABZR87_RS19065at 639.762 kb on + strand, within ABZR87_RS19065at 639.762 kb on + strand, within ABZR87_RS19065at 639.763 kb on - strand, within ABZR87_RS19065at 639.768 kb on + strand, within ABZR87_RS19065at 639.768 kb on + strand, within ABZR87_RS19065at 639.768 kb on + strand, within ABZR87_RS19065at 639.945 kb on - strand, within ABZR87_RS19065at 640.047 kb on - strand, within ABZR87_RS19065at 640.047 kb on - strand, within ABZR87_RS19065at 640.156 kb on - strandat 640.156 kb on - strandat 640.156 kb on - strandat 640.156 kb on - strandat 640.294 kb on + strand, within ABZR87_RS19070

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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637,417 + -0.1
637,417 + -0.2
637,417 + +0.5
637,418 - -1.9
637,418 - +0.0
637,464 + -2.4
637,464 + -0.3
637,465 - -0.5
637,465 - -1.7
637,465 - -0.1
637,692 + ABZR87_RS19055 0.26 -2.4
637,692 + ABZR87_RS19055 0.26 +1.7
637,693 - ABZR87_RS19055 0.26 -1.1
637,693 - ABZR87_RS19055 0.26 -0.2
637,693 - ABZR87_RS19055 0.26 -2.3
637,794 + ABZR87_RS19055 0.36 -1.4
637,794 + ABZR87_RS19055 0.36 -0.4
637,912 + ABZR87_RS19055 0.49 -0.8
637,913 - ABZR87_RS19055 0.49 +0.7
637,913 - ABZR87_RS19055 0.49 +0.2
637,913 - ABZR87_RS19055 0.49 -0.4
637,913 - ABZR87_RS19055 0.49 -0.4
637,913 - ABZR87_RS19055 0.49 -0.5
637,971 + ABZR87_RS19055 0.55 +0.2
637,971 + ABZR87_RS19055 0.55 -0.4
637,971 + ABZR87_RS19055 0.55 -2.9
637,972 - ABZR87_RS19055 0.55 +0.6
637,972 - ABZR87_RS19055 0.55 +1.0
637,992 + ABZR87_RS19055 0.57 +0.5
637,992 + ABZR87_RS19055 0.57 -2.4
638,296 + ABZR87_RS19055 0.88 -2.3
638,297 - ABZR87_RS19055 0.88 +0.9
638,297 - ABZR87_RS19055 0.88 +0.3
638,374 - +0.3
638,409 + -1.0
638,409 + +0.2
638,483 + -0.9
638,483 + +0.7
638,484 - -0.0
638,484 - +0.9
638,484 - -0.3
638,767 + ABZR87_RS19060 0.39 +0.5
638,767 + ABZR87_RS19060 0.39 +0.9
638,768 - ABZR87_RS19060 0.39 -0.5
638,768 - ABZR87_RS19060 0.39 +0.4
638,811 + ABZR87_RS19060 0.44 +0.4
638,811 + ABZR87_RS19060 0.44 +1.1
639,237 + ABZR87_RS19060 0.90 +1.8
639,238 - ABZR87_RS19060 0.90 -1.3
639,530 + ABZR87_RS19065 0.24 +0.5
639,530 + ABZR87_RS19065 0.24 -0.9
639,530 + ABZR87_RS19065 0.24 -0.1
639,665 + ABZR87_RS19065 0.41 -0.2
639,665 + ABZR87_RS19065 0.41 +0.3
639,665 + ABZR87_RS19065 0.41 +0.2
639,666 - ABZR87_RS19065 0.41 +0.5
639,666 - ABZR87_RS19065 0.41 +0.2
639,674 + ABZR87_RS19065 0.42 -1.6
639,675 - ABZR87_RS19065 0.42 -0.4
639,690 - ABZR87_RS19065 0.44 -0.4
639,690 - ABZR87_RS19065 0.44 -2.5
639,762 + ABZR87_RS19065 0.53 -0.4
639,762 + ABZR87_RS19065 0.53 -0.3
639,763 - ABZR87_RS19065 0.53 +1.1
639,768 + ABZR87_RS19065 0.54 -0.1
639,768 + ABZR87_RS19065 0.54 +0.3
639,768 + ABZR87_RS19065 0.54 -1.4
639,945 - ABZR87_RS19065 0.76 -0.5
640,047 - ABZR87_RS19065 0.89 +1.4
640,047 - ABZR87_RS19065 0.89 +0.1
640,156 - +1.6
640,156 - -1.1
640,156 - +0.2
640,156 - +1.0
640,294 + ABZR87_RS19070 0.10 +1.0

Or see this region's nucleotide sequence