Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18770 and ABZR87_RS18775 are separated by 16 nucleotides ABZR87_RS18775 and ABZR87_RS18780 are separated by 457 nucleotides ABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotides ABZR87_RS18785 and ABZR87_RS18790 are separated by 127 nucleotides
ABZR87_RS18770: ABZR87_RS18770 - S10 family peptidase, at 564,376 to 566,109
_RS18770
ABZR87_RS18775: ABZR87_RS18775 - hypothetical protein, at 566,126 to 566,257
_RS18775
ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861
_RS18780
ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632
_RS18785
ABZR87_RS18790: ABZR87_RS18790 - LysR family transcriptional regulator, at 567,760 to 568,707
_RS18790
Position (kb) 566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.871 kb on - strand, within ABZR87_RS18770 at 565.873 kb on + strand, within ABZR87_RS18770 at 565.873 kb on + strand, within ABZR87_RS18770 at 565.874 kb on - strand, within ABZR87_RS18770 at 565.894 kb on + strand, within ABZR87_RS18770 at 565.895 kb on - strand, within ABZR87_RS18770 at 565.969 kb on + strand at 565.969 kb on + strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.991 kb on - strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.042 kb on - strand at 566.042 kb on - strand at 566.139 kb on + strand at 566.142 kb on + strand, within ABZR87_RS18775 at 566.142 kb on + strand, within ABZR87_RS18775 at 566.142 kb on + strand, within ABZR87_RS18775 at 566.143 kb on - strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.154 kb on + strand, within ABZR87_RS18775 at 566.154 kb on + strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.173 kb on - strand, within ABZR87_RS18775 at 566.302 kb on + strand at 566.303 kb on - strand at 566.328 kb on + strand at 566.329 kb on - strand at 566.337 kb on + strand at 566.337 kb on + strand at 566.338 kb on - strand at 566.338 kb on - strand at 566.338 kb on - strand at 566.412 kb on + strand at 566.423 kb on + strand at 566.424 kb on - strand at 566.501 kb on + strand at 566.501 kb on + strand at 566.502 kb on - strand at 566.502 kb on - strand at 566.512 kb on + strand at 566.512 kb on + strand at 566.512 kb on + strand at 566.513 kb on - strand at 566.513 kb on - strand at 566.542 kb on + strand at 566.542 kb on + strand at 566.542 kb on + strand at 566.599 kb on + strand at 566.599 kb on + strand at 566.599 kb on + strand at 566.600 kb on - strand at 566.600 kb on - strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.604 kb on - strand at 566.604 kb on - strand at 566.604 kb on - strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.699 kb on - strand at 566.699 kb on - strand at 566.699 kb on - strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.860 kb on - strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.108 kb on + strand, within ABZR87_RS18785 at 567.108 kb on + strand, within ABZR87_RS18785 at 567.109 kb on - strand, within ABZR87_RS18785 at 567.158 kb on - strand, within ABZR87_RS18785 at 567.158 kb on - strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.203 kb on + strand, within ABZR87_RS18785 at 567.203 kb on + strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.271 kb on + strand, within ABZR87_RS18785 at 567.271 kb on + strand, within ABZR87_RS18785 at 567.272 kb on - strand, within ABZR87_RS18785 at 567.272 kb on - strand, within ABZR87_RS18785 at 567.272 kb on - strand, within ABZR87_RS18785 at 567.343 kb on + strand, within ABZR87_RS18785 at 567.343 kb on + strand, within ABZR87_RS18785 at 567.344 kb on - strand, within ABZR87_RS18785 at 567.344 kb on - strand, within ABZR87_RS18785 at 567.670 kb on + strand at 567.671 kb on - strand at 567.671 kb on - strand at 567.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 565,801 + ABZR87_RS18770 0.82 +0.2 565,801 + ABZR87_RS18770 0.82 +0.5 565,801 + ABZR87_RS18770 0.82 -0.4 565,801 + ABZR87_RS18770 0.82 +1.3 565,801 + ABZR87_RS18770 0.82 +0.7 565,802 - ABZR87_RS18770 0.82 +0.4 565,802 - ABZR87_RS18770 0.82 -0.0 565,802 - ABZR87_RS18770 0.82 +0.0 565,802 - ABZR87_RS18770 0.82 +0.0 565,871 - ABZR87_RS18770 0.86 +0.3 565,873 + ABZR87_RS18770 0.86 +1.0 565,873 + ABZR87_RS18770 0.86 -0.2 565,874 - ABZR87_RS18770 0.86 -2.5 565,894 + ABZR87_RS18770 0.88 +0.3 565,895 - ABZR87_RS18770 0.88 -0.2 565,969 + +1.6 565,969 + -1.1 565,970 - +0.2 565,970 - +0.2 565,970 - +0.2 565,970 - +0.2 565,990 + -0.5 565,990 + +0.7 565,990 + -1.1 565,990 + +0.4 565,990 + -0.7 565,990 + -2.4 565,991 - +0.6 566,041 + +1.0 566,041 + -0.1 566,041 + -0.4 566,041 + -2.7 566,041 + +2.2 566,041 + +1.0 566,042 - +0.7 566,042 - -0.4 566,139 + +1.0 566,142 + ABZR87_RS18775 0.12 +0.1 566,142 + ABZR87_RS18775 0.12 -0.7 566,142 + ABZR87_RS18775 0.12 -1.1 566,143 - ABZR87_RS18775 0.13 -1.3 566,151 + ABZR87_RS18775 0.19 -1.1 566,151 + ABZR87_RS18775 0.19 +0.3 566,151 + ABZR87_RS18775 0.19 -0.8 566,151 + ABZR87_RS18775 0.19 -0.2 566,152 - ABZR87_RS18775 0.20 -0.1 566,152 - ABZR87_RS18775 0.20 -1.9 566,152 - ABZR87_RS18775 0.20 +0.7 566,152 - ABZR87_RS18775 0.20 +0.4 566,152 - ABZR87_RS18775 0.20 +0.6 566,154 + ABZR87_RS18775 0.21 +0.6 566,154 + ABZR87_RS18775 0.21 -0.4 566,155 - ABZR87_RS18775 0.22 -2.2 566,155 - ABZR87_RS18775 0.22 -0.1 566,155 - ABZR87_RS18775 0.22 -0.0 566,169 + ABZR87_RS18775 0.33 -1.1 566,169 + ABZR87_RS18775 0.33 -1.5 566,169 + ABZR87_RS18775 0.33 -0.4 566,170 - ABZR87_RS18775 0.33 -0.9 566,170 - ABZR87_RS18775 0.33 -0.3 566,170 - ABZR87_RS18775 0.33 -2.5 566,173 - ABZR87_RS18775 0.36 +0.6 566,302 + -2.6 566,303 - -0.9 566,328 + -0.1 566,329 - -0.7 566,337 + +0.4 566,337 + -0.7 566,338 - +0.8 566,338 - +0.3 566,338 - +2.0 566,412 + -0.1 566,423 + -0.6 566,424 - -0.4 566,501 + -1.5 566,501 + -0.3 566,502 - -1.4 566,502 - +1.0 566,512 + -0.2 566,512 + +0.7 566,512 + -1.1 566,513 - -0.6 566,513 - +0.3 566,542 + +0.9 566,542 + +0.6 566,542 + -0.7 566,599 + +0.9 566,599 + +0.5 566,599 + +1.0 566,600 - -1.5 566,600 - +1.2 566,601 + -0.4 566,601 + +2.0 566,601 + -0.0 566,601 + +0.5 566,602 - -0.5 566,602 - +1.7 566,602 - +0.6 566,602 - -0.4 566,602 - +0.3 566,602 - +0.3 566,603 + -1.2 566,603 + +1.2 566,603 + +0.0 566,603 + -1.3 566,603 + +1.6 566,603 + +0.8 566,603 + -0.2 566,604 - -0.8 566,604 - +0.4 566,604 - -0.5 566,698 + +0.2 566,698 + -0.0 566,699 - +1.0 566,699 - +1.1 566,699 - -0.3 566,859 + +1.4 566,859 + -0.8 566,859 + -1.1 566,860 - +0.8 567,027 + -2.3 567,027 + +1.1 567,027 + -0.4 567,027 + +0.4 567,027 + -0.5 567,027 + -0.1 567,028 - -1.1 567,028 - -0.7 567,028 - -1.3 567,108 + ABZR87_RS18785 0.16 -0.4 567,108 + ABZR87_RS18785 0.16 -0.2 567,109 - ABZR87_RS18785 0.16 -1.2 567,158 - ABZR87_RS18785 0.24 -0.4 567,158 - ABZR87_RS18785 0.24 -0.6 567,199 + ABZR87_RS18785 0.31 -1.1 567,199 + ABZR87_RS18785 0.31 +0.4 567,199 + ABZR87_RS18785 0.31 -0.6 567,199 + ABZR87_RS18785 0.31 +0.4 567,199 + ABZR87_RS18785 0.31 +1.0 567,199 + ABZR87_RS18785 0.31 +1.3 567,199 + ABZR87_RS18785 0.31 -1.0 567,199 + ABZR87_RS18785 0.31 +0.6 567,199 + ABZR87_RS18785 0.31 +0.2 567,200 - ABZR87_RS18785 0.31 -0.2 567,200 - ABZR87_RS18785 0.31 -0.2 567,200 - ABZR87_RS18785 0.31 +0.0 567,200 - ABZR87_RS18785 0.31 -1.7 567,200 - ABZR87_RS18785 0.31 -0.4 567,200 - ABZR87_RS18785 0.31 -0.3 567,203 + ABZR87_RS18785 0.31 +0.5 567,203 + ABZR87_RS18785 0.31 -1.1 567,204 - ABZR87_RS18785 0.32 -3.0 567,204 - ABZR87_RS18785 0.32 -1.1 567,204 - ABZR87_RS18785 0.32 +0.1 567,271 + ABZR87_RS18785 0.42 -0.8 567,271 + ABZR87_RS18785 0.42 -0.8 567,272 - ABZR87_RS18785 0.42 +1.2 567,272 - ABZR87_RS18785 0.42 +0.4 567,272 - ABZR87_RS18785 0.42 -0.0 567,343 + ABZR87_RS18785 0.54 +1.0 567,343 + ABZR87_RS18785 0.54 +0.6 567,344 - ABZR87_RS18785 0.54 -0.3 567,344 - ABZR87_RS18785 0.54 -1.8 567,670 + -0.3 567,671 - -0.7 567,671 - +0.5 567,722 - -0.4
Or see this region's nucleotide sequence