Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18375

Experiment: rhizosphere sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18370 and ABZR87_RS18375 are separated by 177 nucleotidesABZR87_RS18375 and ABZR87_RS18380 are separated by 857 nucleotides ABZR87_RS18370: ABZR87_RS18370 - arylamine N-acetyltransferase, at 487,896 to 488,705 _RS18370 ABZR87_RS18375: ABZR87_RS18375 - hypothetical protein, at 488,883 to 489,161 _RS18375 ABZR87_RS18380: ABZR87_RS18380 - hypothetical protein, at 490,019 to 492,145 _RS18380 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1 2at 487.924 kb on - strandat 488.029 kb on + strand, within ABZR87_RS18370at 488.029 kb on + strand, within ABZR87_RS18370at 488.029 kb on + strand, within ABZR87_RS18370at 488.030 kb on - strand, within ABZR87_RS18370at 488.030 kb on - strand, within ABZR87_RS18370at 488.104 kb on - strand, within ABZR87_RS18370at 488.374 kb on + strand, within ABZR87_RS18370at 488.375 kb on - strand, within ABZR87_RS18370at 488.389 kb on + strand, within ABZR87_RS18370at 488.389 kb on + strand, within ABZR87_RS18370at 488.390 kb on - strand, within ABZR87_RS18370at 488.393 kb on + strand, within ABZR87_RS18370at 488.469 kb on + strand, within ABZR87_RS18370at 488.469 kb on + strand, within ABZR87_RS18370at 488.470 kb on - strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.482 kb on - strand, within ABZR87_RS18370at 488.640 kb on + strandat 488.641 kb on - strandat 488.641 kb on - strandat 488.738 kb on + strandat 488.738 kb on + strandat 488.738 kb on + strandat 488.738 kb on + strandat 488.963 kb on + strand, within ABZR87_RS18375at 488.963 kb on + strand, within ABZR87_RS18375at 488.964 kb on - strand, within ABZR87_RS18375at 488.991 kb on - strand, within ABZR87_RS18375at 488.991 kb on - strand, within ABZR87_RS18375at 489.024 kb on + strand, within ABZR87_RS18375at 489.024 kb on + strand, within ABZR87_RS18375at 489.024 kb on + strand, within ABZR87_RS18375at 489.025 kb on - strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.038 kb on + strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.039 kb on - strand, within ABZR87_RS18375at 489.042 kb on + strand, within ABZR87_RS18375at 489.043 kb on - strand, within ABZR87_RS18375at 489.084 kb on - strand, within ABZR87_RS18375at 489.107 kb on - strand, within ABZR87_RS18375at 489.107 kb on - strand, within ABZR87_RS18375at 489.136 kb on + strandat 489.239 kb on + strandat 489.335 kb on + strandat 489.394 kb on - strandat 489.420 kb on + strandat 489.420 kb on + strandat 489.422 kb on + strandat 489.499 kb on - strandat 489.898 kb on + strandat 489.940 kb on + strandat 489.940 kb on + strandat 489.941 kb on - strandat 490.020 kb on + strandat 490.020 kb on + strandat 490.020 kb on + strandat 490.021 kb on - strandat 490.021 kb on - strandat 490.021 kb on - strandat 490.026 kb on + strandat 490.026 kb on + strandat 490.027 kb on - strandat 490.032 kb on + strandat 490.032 kb on + strandat 490.032 kb on + strandat 490.032 kb on + strandat 490.032 kb on + strandat 490.033 kb on - strandat 490.033 kb on - strandat 490.033 kb on - strandat 490.033 kb on - strandat 490.068 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
remove
487,924 - -0.3
488,029 + ABZR87_RS18370 0.16 +0.3
488,029 + ABZR87_RS18370 0.16 +1.4
488,029 + ABZR87_RS18370 0.16 -0.5
488,030 - ABZR87_RS18370 0.17 +1.6
488,030 - ABZR87_RS18370 0.17 -0.5
488,104 - ABZR87_RS18370 0.26 +1.8
488,374 + ABZR87_RS18370 0.59 +0.4
488,375 - ABZR87_RS18370 0.59 +2.1
488,389 + ABZR87_RS18370 0.61 +0.0
488,389 + ABZR87_RS18370 0.61 -0.2
488,390 - ABZR87_RS18370 0.61 +0.1
488,393 + ABZR87_RS18370 0.61 +2.0
488,469 + ABZR87_RS18370 0.71 +1.7
488,469 + ABZR87_RS18370 0.71 +0.1
488,470 - ABZR87_RS18370 0.71 -0.6
488,481 + ABZR87_RS18370 0.72 +0.5
488,481 + ABZR87_RS18370 0.72 +0.3
488,481 + ABZR87_RS18370 0.72 +1.7
488,481 + ABZR87_RS18370 0.72 -0.0
488,482 - ABZR87_RS18370 0.72 -0.0
488,640 + +0.0
488,641 - +0.6
488,641 - -0.4
488,738 + +1.3
488,738 + -1.7
488,738 + +1.4
488,738 + +0.7
488,963 + ABZR87_RS18375 0.29 -0.9
488,963 + ABZR87_RS18375 0.29 -0.2
488,964 - ABZR87_RS18375 0.29 -1.2
488,991 - ABZR87_RS18375 0.39 +0.5
488,991 - ABZR87_RS18375 0.39 -0.9
489,024 + ABZR87_RS18375 0.51 +0.8
489,024 + ABZR87_RS18375 0.51 +0.4
489,024 + ABZR87_RS18375 0.51 -0.2
489,025 - ABZR87_RS18375 0.51 +0.2
489,038 + ABZR87_RS18375 0.56 -1.8
489,038 + ABZR87_RS18375 0.56 -1.2
489,038 + ABZR87_RS18375 0.56 +1.0
489,038 + ABZR87_RS18375 0.56 +0.2
489,038 + ABZR87_RS18375 0.56 +0.6
489,038 + ABZR87_RS18375 0.56 +0.2
489,038 + ABZR87_RS18375 0.56 +1.7
489,039 - ABZR87_RS18375 0.56 -0.9
489,039 - ABZR87_RS18375 0.56 -2.3
489,039 - ABZR87_RS18375 0.56 -1.1
489,039 - ABZR87_RS18375 0.56 +0.6
489,039 - ABZR87_RS18375 0.56 +0.5
489,039 - ABZR87_RS18375 0.56 +0.3
489,039 - ABZR87_RS18375 0.56 -0.0
489,042 + ABZR87_RS18375 0.57 +0.1
489,043 - ABZR87_RS18375 0.57 -1.6
489,084 - ABZR87_RS18375 0.72 +1.0
489,107 - ABZR87_RS18375 0.80 +2.4
489,107 - ABZR87_RS18375 0.80 -0.1
489,136 + -0.6
489,239 + +0.9
489,335 + -0.1
489,394 - +0.1
489,420 + +1.3
489,420 + +0.0
489,422 + +0.9
489,499 - -0.8
489,898 + +0.2
489,940 + -0.8
489,940 + +0.3
489,941 - +0.9
490,020 + +0.6
490,020 + -0.1
490,020 + +0.8
490,021 - -1.7
490,021 - -0.3
490,021 - -2.6
490,026 + +1.4
490,026 + -0.1
490,027 - +0.0
490,032 + -1.2
490,032 + +0.9
490,032 + +0.5
490,032 + +0.2
490,032 + +1.3
490,033 - -1.2
490,033 - -0.3
490,033 - +1.0
490,033 - +0.3
490,068 + +0.6

Or see this region's nucleotide sequence