Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18215 and ABZR87_RS18220 are separated by 270 nucleotides ABZR87_RS18220 and ABZR87_RS18225 are separated by 81 nucleotides
ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866
_RS18215
ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165
_RS18220
ABZR87_RS18225: ABZR87_RS18225 - D-xylose ABC transporter ATP-binding protein, at 459,247 to 460,830
_RS18225
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 457.356 kb on - strand, within ABZR87_RS18215 at 457.408 kb on - strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.545 kb on - strand, within ABZR87_RS18215 at 457.545 kb on - strand, within ABZR87_RS18215 at 457.562 kb on + strand, within ABZR87_RS18215 at 457.563 kb on - strand, within ABZR87_RS18215 at 457.580 kb on + strand, within ABZR87_RS18215 at 457.581 kb on - strand, within ABZR87_RS18215 at 457.581 kb on - strand, within ABZR87_RS18215 at 457.754 kb on + strand at 457.755 kb on - strand at 457.787 kb on + strand at 457.788 kb on - strand at 457.788 kb on - strand at 457.903 kb on + strand at 457.945 kb on - strand at 457.998 kb on - strand at 458.019 kb on - strand at 458.079 kb on - strand at 458.303 kb on - strand, within ABZR87_RS18220 at 458.501 kb on - strand, within ABZR87_RS18220 at 458.501 kb on - strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.587 kb on + strand, within ABZR87_RS18220 at 458.587 kb on + strand, within ABZR87_RS18220 at 458.588 kb on - strand, within ABZR87_RS18220 at 458.612 kb on - strand, within ABZR87_RS18220 at 458.612 kb on - strand, within ABZR87_RS18220 at 458.956 kb on + strand, within ABZR87_RS18220 at 458.956 kb on + strand, within ABZR87_RS18220 at 458.957 kb on - strand, within ABZR87_RS18220 at 459.031 kb on + strand, within ABZR87_RS18220 at 459.032 kb on - strand, within ABZR87_RS18220 at 459.043 kb on + strand, within ABZR87_RS18220 at 459.137 kb on - strand at 459.230 kb on + strand at 459.230 kb on + strand at 459.316 kb on - strand at 459.591 kb on + strand, within ABZR87_RS18225 at 459.591 kb on + strand, within ABZR87_RS18225 at 459.591 kb on + strand, within ABZR87_RS18225 at 459.598 kb on + strand, within ABZR87_RS18225 at 459.599 kb on - strand, within ABZR87_RS18225 at 459.610 kb on + strand, within ABZR87_RS18225 at 459.610 kb on + strand, within ABZR87_RS18225 at 459.610 kb on + strand, within ABZR87_RS18225 at 459.611 kb on - strand, within ABZR87_RS18225 at 459.611 kb on - strand, within ABZR87_RS18225 at 459.611 kb on - strand, within ABZR87_RS18225 at 459.682 kb on + strand, within ABZR87_RS18225 at 459.683 kb on - strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 460.055 kb on - strand, within ABZR87_RS18225
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 457,356 - ABZR87_RS18215 0.58 +1.0 457,408 - ABZR87_RS18215 0.62 -0.5 457,544 + ABZR87_RS18215 0.74 +0.2 457,544 + ABZR87_RS18215 0.74 -0.0 457,544 + ABZR87_RS18215 0.74 +5.1 457,544 + ABZR87_RS18215 0.74 +0.1 457,544 + ABZR87_RS18215 0.74 +1.0 457,545 - ABZR87_RS18215 0.74 +0.5 457,545 - ABZR87_RS18215 0.74 -1.6 457,562 + ABZR87_RS18215 0.75 +0.8 457,563 - ABZR87_RS18215 0.75 -0.4 457,580 + ABZR87_RS18215 0.77 +0.6 457,581 - ABZR87_RS18215 0.77 +1.1 457,581 - ABZR87_RS18215 0.77 +0.9 457,754 + -0.8 457,755 - -0.7 457,787 + -0.8 457,788 - -1.4 457,788 - +2.3 457,903 + +0.6 457,945 - +0.8 457,998 - -0.3 458,019 - -0.3 458,079 - -0.4 458,303 - ABZR87_RS18220 0.16 +0.5 458,501 - ABZR87_RS18220 0.35 -1.1 458,501 - ABZR87_RS18220 0.35 +0.1 458,536 + ABZR87_RS18220 0.39 -0.1 458,536 + ABZR87_RS18220 0.39 +0.4 458,536 + ABZR87_RS18220 0.39 +0.1 458,587 + ABZR87_RS18220 0.44 +1.1 458,587 + ABZR87_RS18220 0.44 +0.1 458,588 - ABZR87_RS18220 0.44 +0.0 458,612 - ABZR87_RS18220 0.46 -0.5 458,612 - ABZR87_RS18220 0.46 -0.0 458,956 + ABZR87_RS18220 0.80 -1.3 458,956 + ABZR87_RS18220 0.80 -1.4 458,957 - ABZR87_RS18220 0.80 +1.0 459,031 + ABZR87_RS18220 0.87 -0.3 459,032 - ABZR87_RS18220 0.87 -0.3 459,043 + ABZR87_RS18220 0.88 -0.6 459,137 - +1.4 459,230 + -0.9 459,230 + -1.5 459,316 - +0.4 459,591 + ABZR87_RS18225 0.22 +0.1 459,591 + ABZR87_RS18225 0.22 -0.1 459,591 + ABZR87_RS18225 0.22 -0.2 459,598 + ABZR87_RS18225 0.22 +0.6 459,599 - ABZR87_RS18225 0.22 +0.8 459,610 + ABZR87_RS18225 0.23 -2.3 459,610 + ABZR87_RS18225 0.23 -0.1 459,610 + ABZR87_RS18225 0.23 -2.5 459,611 - ABZR87_RS18225 0.23 -0.3 459,611 - ABZR87_RS18225 0.23 +0.0 459,611 - ABZR87_RS18225 0.23 +0.0 459,682 + ABZR87_RS18225 0.27 -0.4 459,683 - ABZR87_RS18225 0.28 -1.5 459,844 + ABZR87_RS18225 0.38 +1.7 459,844 + ABZR87_RS18225 0.38 +0.1 459,844 + ABZR87_RS18225 0.38 -1.6 459,844 + ABZR87_RS18225 0.38 +0.7 459,844 + ABZR87_RS18225 0.38 +1.0 460,055 - ABZR87_RS18225 0.51 -0.5
Or see this region's nucleotide sequence