Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18100 and ABZR87_RS18105 overlap by 4 nucleotides ABZR87_RS18105 and ABZR87_RS18110 are separated by 103 nucleotides ABZR87_RS18110 and ABZR87_RS18115 are separated by 116 nucleotides ABZR87_RS18115 and ABZR87_RS18120 overlap by 26 nucleotides
ABZR87_RS18100: ABZR87_RS18100 - type III secretion system inner membrane ring lipoprotein SctJ, at 424,909 to 425,730
_RS18100
ABZR87_RS18105: ABZR87_RS18105 - hypothetical protein, at 425,727 to 426,152
_RS18105
ABZR87_RS18110: ABZR87_RS18110 - hypothetical protein, at 426,256 to 426,468
_RS18110
ABZR87_RS18115: ABZR87_RS18115 - FHA domain-containing protein, at 426,585 to 427,856
_RS18115
ABZR87_RS18120: ABZR87_RS18120 - type III secretion system outer membrane ring subunit SctC, at 427,831 to 429,708
_RS18120
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.840 kb on + strand, within ABZR87_RS18105 at 425.980 kb on - strand, within ABZR87_RS18105 at 426.236 kb on + strand at 426.236 kb on + strand at 426.237 kb on - strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.255 kb on - strand at 426.255 kb on - strand at 426.817 kb on + strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.868 kb on + strand, within ABZR87_RS18115 at 426.869 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115 at 427.201 kb on + strand, within ABZR87_RS18115 at 427.202 kb on - strand, within ABZR87_RS18115 at 427.216 kb on + strand, within ABZR87_RS18115 at 427.217 kb on - strand, within ABZR87_RS18115 at 427.680 kb on + strand, within ABZR87_RS18115 at 427.680 kb on + strand, within ABZR87_RS18115 at 427.680 kb on + strand, within ABZR87_RS18115 at 427.681 kb on - strand, within ABZR87_RS18115 at 427.681 kb on - strand, within ABZR87_RS18115 at 427.681 kb on - strand, within ABZR87_RS18115 at 427.792 kb on + strand at 427.792 kb on + strand at 427.792 kb on + strand at 427.793 kb on - strand at 428.081 kb on + strand, within ABZR87_RS18120 at 428.117 kb on + strand, within ABZR87_RS18120 at 428.118 kb on - strand, within ABZR87_RS18120 at 428.399 kb on + strand, within ABZR87_RS18120 at 428.399 kb on + strand, within ABZR87_RS18120 at 428.435 kb on + strand, within ABZR87_RS18120 at 428.435 kb on + strand, within ABZR87_RS18120 at 428.435 kb on + strand, within ABZR87_RS18120 at 428.436 kb on - strand, within ABZR87_RS18120 at 428.552 kb on + strand, within ABZR87_RS18120 at 428.552 kb on + strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.813 kb on + strand, within ABZR87_RS18120
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 425,840 + ABZR87_RS18105 0.27 +1.0 425,980 - ABZR87_RS18105 0.59 -0.3 426,236 + -1.8 426,236 + +0.9 426,237 - -1.1 426,254 + +0.4 426,254 + -0.6 426,254 + -2.0 426,254 + +0.0 426,254 + +0.2 426,254 + -1.4 426,255 - +0.4 426,255 - -0.5 426,817 + ABZR87_RS18115 0.18 -0.9 426,818 - ABZR87_RS18115 0.18 -0.4 426,818 - ABZR87_RS18115 0.18 +0.4 426,818 - ABZR87_RS18115 0.18 -0.5 426,868 + ABZR87_RS18115 0.22 -0.5 426,869 - ABZR87_RS18115 0.22 -0.2 426,938 - ABZR87_RS18115 0.28 -0.3 426,938 - ABZR87_RS18115 0.28 +0.3 427,123 + ABZR87_RS18115 0.42 -1.5 427,123 + ABZR87_RS18115 0.42 -0.3 427,123 + ABZR87_RS18115 0.42 -1.1 427,123 + ABZR87_RS18115 0.42 +1.7 427,123 + ABZR87_RS18115 0.42 -0.8 427,123 + ABZR87_RS18115 0.42 +0.3 427,123 + ABZR87_RS18115 0.42 +0.3 427,124 - ABZR87_RS18115 0.42 -0.6 427,124 - ABZR87_RS18115 0.42 +0.2 427,201 + ABZR87_RS18115 0.48 -0.7 427,202 - ABZR87_RS18115 0.49 +1.4 427,216 + ABZR87_RS18115 0.50 -0.3 427,217 - ABZR87_RS18115 0.50 -0.2 427,680 + ABZR87_RS18115 0.86 +0.1 427,680 + ABZR87_RS18115 0.86 +0.1 427,680 + ABZR87_RS18115 0.86 +0.4 427,681 - ABZR87_RS18115 0.86 -0.4 427,681 - ABZR87_RS18115 0.86 +0.4 427,681 - ABZR87_RS18115 0.86 -1.5 427,792 + +0.9 427,792 + +0.1 427,792 + -0.5 427,793 - -1.2 428,081 + ABZR87_RS18120 0.13 +1.3 428,117 + ABZR87_RS18120 0.15 -0.2 428,118 - ABZR87_RS18120 0.15 -0.8 428,399 + ABZR87_RS18120 0.30 +0.0 428,399 + ABZR87_RS18120 0.30 -1.4 428,435 + ABZR87_RS18120 0.32 +0.4 428,435 + ABZR87_RS18120 0.32 -0.2 428,435 + ABZR87_RS18120 0.32 -0.0 428,436 - ABZR87_RS18120 0.32 -2.5 428,552 + ABZR87_RS18120 0.38 -0.3 428,552 + ABZR87_RS18120 0.38 -0.1 428,553 - ABZR87_RS18120 0.38 -0.1 428,553 - ABZR87_RS18120 0.38 +0.4 428,553 - ABZR87_RS18120 0.38 +2.1 428,553 - ABZR87_RS18120 0.38 +0.9 428,553 - ABZR87_RS18120 0.38 -0.2 428,553 - ABZR87_RS18120 0.38 +0.6 428,553 - ABZR87_RS18120 0.38 +0.8 428,813 + ABZR87_RS18120 0.52 -0.4
Or see this region's nucleotide sequence