Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17970 and ABZR87_RS17975 are separated by 225 nucleotides ABZR87_RS17975 and ABZR87_RS17980 are separated by 103 nucleotides
ABZR87_RS17970: ABZR87_RS17970 - methyl-accepting chemotaxis protein, at 385,696 to 387,540
_RS17970
ABZR87_RS17975: ABZR87_RS17975 - methyl-accepting chemotaxis protein, at 387,766 to 389,688
_RS17975
ABZR87_RS17980: ABZR87_RS17980 - CheR family methyltransferase, at 389,792 to 390,670
_RS17980
Position (kb) 387
388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 387.361 kb on - strand at 387.520 kb on - strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.641 kb on - strand at 387.699 kb on + strand at 387.700 kb on - strand at 387.739 kb on + strand at 387.739 kb on + strand at 387.740 kb on - strand at 387.740 kb on - strand at 387.741 kb on + strand at 387.741 kb on + strand at 387.742 kb on - strand at 387.759 kb on - strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.863 kb on - strand at 387.863 kb on - strand at 387.863 kb on - strand at 387.863 kb on - strand at 387.864 kb on + strand at 387.864 kb on + strand at 387.865 kb on - strand at 388.132 kb on + strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.453 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.776 kb on + strand at 389.776 kb on + strand at 389.784 kb on - strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.899 kb on + strand, within ABZR87_RS17980 at 389.899 kb on + strand, within ABZR87_RS17980 at 389.900 kb on - strand, within ABZR87_RS17980 at 389.933 kb on + strand, within ABZR87_RS17980 at 389.934 kb on - strand, within ABZR87_RS17980 at 389.934 kb on - strand, within ABZR87_RS17980 at 389.987 kb on + strand, within ABZR87_RS17980 at 390.037 kb on + strand, within ABZR87_RS17980 at 390.038 kb on - strand, within ABZR87_RS17980 at 390.038 kb on - strand, within ABZR87_RS17980 at 390.253 kb on + strand, within ABZR87_RS17980 at 390.254 kb on - strand, within ABZR87_RS17980 at 390.287 kb on + strand, within ABZR87_RS17980 at 390.287 kb on + strand, within ABZR87_RS17980 at 390.288 kb on - strand, within ABZR87_RS17980 at 390.335 kb on + strand, within ABZR87_RS17980 at 390.368 kb on + strand, within ABZR87_RS17980 at 390.368 kb on + strand, within ABZR87_RS17980 at 390.369 kb on - strand, within ABZR87_RS17980 at 390.369 kb on - strand, within ABZR87_RS17980 at 390.488 kb on + strand, within ABZR87_RS17980 at 390.489 kb on - strand, within ABZR87_RS17980 at 390.626 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 387,361 - +3.3 387,520 - +1.7 387,546 + +0.7 387,546 + +1.1 387,546 + -1.3 387,546 + -1.1 387,546 + +0.3 387,546 + +0.4 387,546 + +0.6 387,546 + +1.6 387,546 + +1.5 387,546 + +0.5 387,546 + +1.2 387,546 + -0.1 387,546 + -1.4 387,546 + +0.1 387,546 + -0.1 387,546 + +1.3 387,546 + +0.1 387,546 + +0.2 387,546 + +0.4 387,546 + -0.3 387,547 - +1.2 387,547 - -0.8 387,547 - +0.7 387,547 - -0.3 387,547 - +0.3 387,547 - -0.9 387,547 - -0.4 387,547 - +1.4 387,547 - +0.5 387,547 - +1.5 387,547 - +0.5 387,547 - +1.1 387,547 - -1.4 387,547 - +0.7 387,641 - +0.1 387,699 + +0.6 387,700 - -1.0 387,739 + +0.4 387,739 + +0.8 387,740 - -0.8 387,740 - -0.8 387,741 + -1.2 387,741 + -2.2 387,742 - +0.1 387,759 - +0.3 387,862 + +1.5 387,862 + -1.4 387,862 + -0.1 387,862 + -0.2 387,862 + +0.2 387,862 + +2.3 387,863 - +1.3 387,863 - -0.9 387,863 - -0.9 387,863 - -0.1 387,864 + -0.6 387,864 + -0.8 387,865 - -0.4 388,132 + ABZR87_RS17975 0.19 -1.2 388,133 - ABZR87_RS17975 0.19 +0.1 388,133 - ABZR87_RS17975 0.19 -1.4 388,133 - ABZR87_RS17975 0.19 +0.4 388,133 - ABZR87_RS17975 0.19 -0.5 388,453 + ABZR87_RS17975 0.36 +2.5 389,063 + ABZR87_RS17975 0.67 -0.4 389,063 + ABZR87_RS17975 0.67 +0.3 389,063 + ABZR87_RS17975 0.67 -0.1 389,063 + ABZR87_RS17975 0.67 -0.5 389,063 + ABZR87_RS17975 0.67 +1.2 389,776 + +0.2 389,776 + -0.2 389,784 - -0.6 389,787 + +1.0 389,787 + +1.1 389,787 + -0.1 389,787 + -2.0 389,787 + +0.5 389,787 + +0.4 389,787 + -0.8 389,787 + -1.1 389,787 + -0.2 389,787 + -0.5 389,787 + +0.2 389,787 + -1.7 389,788 - -0.2 389,788 - -0.9 389,788 - -1.9 389,788 - +0.3 389,788 - -2.5 389,788 - -0.8 389,788 - -2.6 389,788 - -1.2 389,788 - -0.2 389,788 - +3.3 389,788 - +1.8 389,788 - +0.2 389,788 - -0.2 389,788 - -0.7 389,788 - -0.5 389,788 - +0.6 389,788 - -2.0 389,788 - -0.0 389,791 + -1.7 389,791 + +0.6 389,791 + -1.5 389,791 + -1.1 389,791 + +0.5 389,792 - -1.6 389,792 - +0.4 389,792 - -1.2 389,792 - +0.4 389,792 - +0.9 389,899 + ABZR87_RS17980 0.12 -2.0 389,899 + ABZR87_RS17980 0.12 +0.0 389,900 - ABZR87_RS17980 0.12 -1.6 389,933 + ABZR87_RS17980 0.16 -0.5 389,934 - ABZR87_RS17980 0.16 -2.8 389,934 - ABZR87_RS17980 0.16 +0.5 389,987 + ABZR87_RS17980 0.22 -0.4 390,037 + ABZR87_RS17980 0.28 -1.6 390,038 - ABZR87_RS17980 0.28 -1.3 390,038 - ABZR87_RS17980 0.28 -0.1 390,253 + ABZR87_RS17980 0.52 -1.1 390,254 - ABZR87_RS17980 0.53 +2.3 390,287 + ABZR87_RS17980 0.56 +0.1 390,287 + ABZR87_RS17980 0.56 -0.8 390,288 - ABZR87_RS17980 0.56 -1.4 390,335 + ABZR87_RS17980 0.62 -1.6 390,368 + ABZR87_RS17980 0.66 +0.0 390,368 + ABZR87_RS17980 0.66 -0.6 390,369 - ABZR87_RS17980 0.66 -2.0 390,369 - ABZR87_RS17980 0.66 -1.1 390,488 + ABZR87_RS17980 0.79 -0.9 390,489 - ABZR87_RS17980 0.79 -0.4 390,626 + -2.4
Or see this region's nucleotide sequence