Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05875

Experiment: rhizosphere sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 1; outgrowth in LB
1,253,129	-		ABZR87_RS05870	0.32	-1.3
1,253,129	-		ABZR87_RS05870	0.32	-1.0
1,253,158	+		ABZR87_RS05870	0.34	-0.2
1,253,170	+		ABZR87_RS05870	0.35	+0.2
1,253,170	+		ABZR87_RS05870	0.35	+1.1
1,253,170	+		ABZR87_RS05870	0.35	-0.9
1,253,239	+		ABZR87_RS05870	0.40	+0.8
1,253,239	+		ABZR87_RS05870	0.40	-0.7
1,253,239	+		ABZR87_RS05870	0.40	-0.2
1,253,239	+		ABZR87_RS05870	0.40	+0.6
1,253,239	+		ABZR87_RS05870	0.40	-0.7
1,253,239	+		ABZR87_RS05870	0.40	+0.3
1,253,239	+		ABZR87_RS05870	0.40	-0.4
1,253,239	+		ABZR87_RS05870	0.40	-0.1
1,253,240	-		ABZR87_RS05870	0.40	+0.4
1,253,240	-		ABZR87_RS05870	0.40	-0.7
1,253,240	-		ABZR87_RS05870	0.40	-1.5
1,253,240	-		ABZR87_RS05870	0.40	-2.5
1,253,240	-		ABZR87_RS05870	0.40	-0.4
1,253,240	-		ABZR87_RS05870	0.40	+0.2
1,253,240	-		ABZR87_RS05870	0.40	-2.4
1,253,240	-		ABZR87_RS05870	0.40	-0.3
1,253,240	-		ABZR87_RS05870	0.40	-1.1
1,253,240	-		ABZR87_RS05870	0.40	-0.0
1,253,318	+		ABZR87_RS05870	0.46	-0.3
1,253,318	+		ABZR87_RS05870	0.46	-1.0
1,253,318	+		ABZR87_RS05870	0.46	-1.2
1,253,318	+		ABZR87_RS05870	0.46	+0.5
1,253,318	+		ABZR87_RS05870	0.46	+1.1
1,253,318	+		ABZR87_RS05870	0.46	+1.6
1,253,319	-		ABZR87_RS05870	0.46	-1.4
1,253,319	-		ABZR87_RS05870	0.46	-1.8
1,253,319	-		ABZR87_RS05870	0.46	+0.1
1,253,319	-		ABZR87_RS05870	0.46	-0.4
1,253,319	-		ABZR87_RS05870	0.46	+0.3
1,253,319	-		ABZR87_RS05870	0.46	-0.9
1,253,334	+		ABZR87_RS05870	0.47	-1.2
1,253,484	+		ABZR87_RS05870	0.58	-2.9
1,253,484	+		ABZR87_RS05870	0.58	-1.9
1,253,484	+		ABZR87_RS05870	0.58	+0.6
1,253,484	+		ABZR87_RS05870	0.58	-0.4
1,253,485	-		ABZR87_RS05870	0.59	+0.4
1,253,485	-		ABZR87_RS05870	0.59	-0.4
1,253,485	-		ABZR87_RS05870	0.59	-2.0
1,253,485	-		ABZR87_RS05870	0.59	-1.1
1,253,500	+		ABZR87_RS05870	0.60	+0.3
1,253,501	-		ABZR87_RS05870	0.60	-0.9
1,253,599	+		ABZR87_RS05870	0.67	-0.4
1,253,599	+		ABZR87_RS05870	0.67	+0.0
1,253,599	+		ABZR87_RS05870	0.67	-1.5
1,253,599	+		ABZR87_RS05870	0.67	+1.9
1,253,599	+		ABZR87_RS05870	0.67	+0.1
1,253,600	-		ABZR87_RS05870	0.67	-0.9
1,253,600	-		ABZR87_RS05870	0.67	-0.5
1,253,600	-		ABZR87_RS05870	0.67	-0.3
1,253,600	-		ABZR87_RS05870	0.67	+0.2
1,253,600	-		ABZR87_RS05870	0.67	+0.2
1,253,600	-		ABZR87_RS05870	0.67	-0.6
1,253,600	-		ABZR87_RS05870	0.67	-0.5
1,253,731	+		ABZR87_RS05870	0.77	-0.1
1,253,731	+		ABZR87_RS05870	0.77	+0.6
1,253,731	+		ABZR87_RS05870	0.77	-1.4
1,253,731	+		ABZR87_RS05870	0.77	+0.4
1,253,731	+		ABZR87_RS05870	0.77	-1.6
1,253,732	-		ABZR87_RS05870	0.77	-0.9
1,253,732	-		ABZR87_RS05870	0.77	-0.9
1,253,732	-		ABZR87_RS05870	0.77	+1.3
1,253,732	-		ABZR87_RS05870	0.77	-2.2
1,253,732	-		ABZR87_RS05870	0.77	-0.3
1,253,732	-		ABZR87_RS05870	0.77	-0.5
1,253,827	-		ABZR87_RS05870	0.84	-1.4
1,253,916	+				+0.2
1,253,916	+				-0.0
1,253,916	+				-1.0
1,253,916	+				-0.1
1,253,916	+				-0.7
1,253,916	+				+0.4
1,253,916	+				-0.4
1,253,916	+				+0.9
1,253,916	+				+0.2
1,253,916	+				+0.3
1,253,916	+				-0.6
1,253,917	-				-1.0
1,253,917	-				-0.6
1,253,917	-				+0.2
1,253,917	-				-2.0
1,253,917	-				-0.3
1,253,931	+				-0.4
1,253,939	-				+1.2
1,253,939	-				+1.2
1,253,939	-				+0.1
1,254,013	+				+0.0
1,254,013	+				-0.6
1,254,014	-				-0.4
1,254,016	-				+1.2
1,254,016	-				+0.6
1,254,016	-				+1.4
1,254,016	-				+0.5
1,254,079	+				+0.8
1,254,079	+				-0.4
1,254,079	+				-0.7
1,254,079	+				-2.0
1,254,079	+				-1.2
1,254,079	+				+0.4
1,254,080	-				+0.2
1,254,080	-				+0.2
1,254,095	+				-0.4
1,254,096	-				+0.0
1,254,096	-				+0.7
1,254,096	-				-0.1
1,254,096	-				-0.4
1,254,179	+		ABZR87_RS05875	0.11	-0.0
1,254,236	+		ABZR87_RS05875	0.17	-0.6
1,254,324	+		ABZR87_RS05875	0.27	-1.6
1,254,324	+		ABZR87_RS05875	0.27	-0.4
1,254,324	+		ABZR87_RS05875	0.27	+0.7
1,254,324	+		ABZR87_RS05875	0.27	-0.7
1,254,324	+		ABZR87_RS05875	0.27	-0.1
1,254,324	+		ABZR87_RS05875	0.27	-0.2
1,254,324	+		ABZR87_RS05875	0.27	+0.8
1,254,324	+		ABZR87_RS05875	0.27	-0.4
1,254,325	-		ABZR87_RS05875	0.27	-0.4
1,254,325	-		ABZR87_RS05875	0.27	-0.7
1,254,325	-		ABZR87_RS05875	0.27	-1.0
1,254,325	-		ABZR87_RS05875	0.27	-0.5
1,254,325	-		ABZR87_RS05875	0.27	-1.4
1,254,325	-		ABZR87_RS05875	0.27	-2.2
1,254,325	-		ABZR87_RS05875	0.27	+0.1
1,254,325	-		ABZR87_RS05875	0.27	+0.4
1,254,325	-		ABZR87_RS05875	0.27	+0.4
1,254,389	+		ABZR87_RS05875	0.34	+0.9
1,254,389	+		ABZR87_RS05875	0.34	+0.8
1,254,389	+		ABZR87_RS05875	0.34	+1.7
1,254,389	+		ABZR87_RS05875	0.34	-0.2
1,254,390	-		ABZR87_RS05875	0.34	-1.7
1,254,407	+		ABZR87_RS05875	0.35	-0.7
1,254,407	+		ABZR87_RS05875	0.35	+0.5
1,254,407	+		ABZR87_RS05875	0.35	+0.2
1,254,417	+		ABZR87_RS05875	0.37	+0.7
1,254,417	+		ABZR87_RS05875	0.37	-0.2
1,254,417	+		ABZR87_RS05875	0.37	+0.2
1,254,418	-		ABZR87_RS05875	0.37	+0.7
1,254,465	+		ABZR87_RS05875	0.42	-0.1
1,254,465	+		ABZR87_RS05875	0.42	-1.6
1,254,466	-		ABZR87_RS05875	0.42	+1.0
1,254,466	-		ABZR87_RS05875	0.42	+0.8
1,254,466	-		ABZR87_RS05875	0.42	+0.1
1,254,482	+		ABZR87_RS05875	0.44	+0.4
1,254,482	+		ABZR87_RS05875	0.44	-0.4
1,254,483	-		ABZR87_RS05875	0.44	+0.2
1,254,664	-		ABZR87_RS05875	0.63	+0.2
1,254,667	+		ABZR87_RS05875	0.64	+0.1
1,254,667	+		ABZR87_RS05875	0.64	-1.6
1,254,667	+		ABZR87_RS05875	0.64	+0.6
1,254,667	+		ABZR87_RS05875	0.64	-0.2
1,254,667	+		ABZR87_RS05875	0.64	+0.8
1,254,668	-		ABZR87_RS05875	0.64	+0.5
1,254,668	-		ABZR87_RS05875	0.64	+0.5
1,254,668	-		ABZR87_RS05875	0.64	-0.1
1,254,668	-		ABZR87_RS05875	0.64	-1.8
1,254,696	+		ABZR87_RS05875	0.67	-0.0
1,254,697	-		ABZR87_RS05875	0.67	+0.6
1,254,697	-		ABZR87_RS05875	0.67	-1.6
1,254,707	+		ABZR87_RS05875	0.68	-0.2
1,254,707	+		ABZR87_RS05875	0.68	+0.6
1,254,708	-		ABZR87_RS05875	0.68	-0.7
1,254,712	+		ABZR87_RS05875	0.68	+1.8
1,254,712	+		ABZR87_RS05875	0.68	-0.2
1,254,712	+		ABZR87_RS05875	0.68	-0.0
1,254,712	+		ABZR87_RS05875	0.68	-0.5
1,254,713	-		ABZR87_RS05875	0.69	+0.4
1,254,713	-		ABZR87_RS05875	0.69	+0.8
1,254,756	+		ABZR87_RS05875	0.73	+2.1
1,254,756	+		ABZR87_RS05875	0.73	-0.5
1,254,756	+		ABZR87_RS05875	0.73	-0.2
1,254,756	+		ABZR87_RS05875	0.73	-0.1
1,254,756	+		ABZR87_RS05875	0.73	+1.3
1,254,756	+		ABZR87_RS05875	0.73	+0.4
1,254,756	+		ABZR87_RS05875	0.73	-0.8
1,254,756	+		ABZR87_RS05875	0.73	+0.5
1,254,757	-		ABZR87_RS05875	0.73	+0.5
1,254,757	-		ABZR87_RS05875	0.73	+0.7
1,254,757	-		ABZR87_RS05875	0.73	-0.9
1,254,782	+		ABZR87_RS05875	0.76	+1.8
1,254,782	+		ABZR87_RS05875	0.76	-0.3
1,254,783	-		ABZR87_RS05875	0.76	+0.1
1,254,798	+		ABZR87_RS05875	0.78	-1.5
1,254,798	+		ABZR87_RS05875	0.78	-1.2
1,254,798	+		ABZR87_RS05875	0.78	+1.3
1,254,799	-		ABZR87_RS05875	0.78	+0.3
1,254,799	-		ABZR87_RS05875	0.78	-1.7
1,254,799	-		ABZR87_RS05875	0.78	-0.2
1,254,799	-		ABZR87_RS05875	0.78	-1.2
1,254,799	-		ABZR87_RS05875	0.78	-0.7
1,254,880	+		ABZR87_RS05875	0.87	+1.0
1,254,880	+		ABZR87_RS05875	0.87	-0.6
1,254,881	-		ABZR87_RS05875	0.87	+0.3
1,254,881	-		ABZR87_RS05875	0.87	+1.1
1,254,881	-		ABZR87_RS05875	0.87	-0.2
1,254,881	-		ABZR87_RS05875	0.87	-0.5
1,254,903	+		ABZR87_RS05875	0.89	-1.0
1,254,904	-		ABZR87_RS05875	0.89	+1.2
1,254,904	-		ABZR87_RS05875	0.89	+0.5
1,254,904	-		ABZR87_RS05875	0.89	-0.9
1,254,904	-		ABZR87_RS05875	0.89	+2.2
1,254,904	-		ABZR87_RS05875	0.89	-1.4
1,254,904	-		ABZR87_RS05875	0.89	+0.9
1,254,904	-		ABZR87_RS05875	0.89	-1.9
1,254,989	+				-1.3
1,254,989	+				-0.5
1,254,989	+				+0.1
1,254,989	+				-0.1
1,254,990	-				+0.9
1,255,020	+				-0.8
1,255,023	+				-1.0
1,255,023	+				+0.2
1,255,023	+				+0.4
1,255,023	+				-0.1
1,255,023	+				+1.1
1,255,023	+				+0.9
1,255,024	-				-0.5
1,255,024	-				-0.1
1,255,057	+				-1.2
1,255,131	+				+0.3
1,255,131	+				+0.3
1,255,132	-				-1.6
1,255,132	-				+0.3
1,255,132	-				-0.5
1,255,132	-				+0.2
1,255,132	-				-2.2
1,255,132	-				-0.4
1,255,132	-				-0.9
1,255,161	+				-0.2
1,255,162	-				-2.9
1,255,162	-				+0.2
1,255,177	+				-0.4
1,255,177	+				-0.6
1,255,177	+				-0.5
1,255,178	-				+0.1
1,255,200	+				-0.9
1,255,201	-				+1.5
1,255,229	+				+0.8
1,255,230	-				+0.1
1,255,257	+				+0.5
1,255,258	-				+1.1
1,255,258	-				-0.2
1,255,294	+				+0.2
1,255,294	+				+0.4
1,255,404	+		ABZR87_RS05880	0.18	+0.2
1,255,404	+		ABZR87_RS05880	0.18	+0.0
1,255,404	+		ABZR87_RS05880	0.18	+1.4
1,255,404	+		ABZR87_RS05880	0.18	+0.6
1,255,404	+		ABZR87_RS05880	0.18	+3.0
1,255,405	-		ABZR87_RS05880	0.18	-0.2
1,255,405	-		ABZR87_RS05880	0.18	+0.5
1,255,559	+		ABZR87_RS05880	0.32	+1.0
1,255,559	+		ABZR87_RS05880	0.32	+1.3
1,255,559	+		ABZR87_RS05880	0.32	+1.5
1,255,560	-		ABZR87_RS05880	0.32	+0.3
1,255,560	-		ABZR87_RS05880	0.32	+0.4
1,255,560	-		ABZR87_RS05880	0.32	+0.6
1,255,626	+		ABZR87_RS05880	0.38	+1.7
1,255,626	+		ABZR87_RS05880	0.38	-0.9
1,255,626	+		ABZR87_RS05880	0.38	-0.4
1,255,626	+		ABZR87_RS05880	0.38	+1.1
1,255,626	+		ABZR87_RS05880	0.38	+0.7
1,255,627	-		ABZR87_RS05880	0.38	+0.7
1,255,627	-		ABZR87_RS05880	0.38	+0.2
1,255,627	-		ABZR87_RS05880	0.38	-0.8
1,255,700	+		ABZR87_RS05880	0.44	+0.2
1,255,700	+		ABZR87_RS05880	0.44	+0.7
1,255,701	-		ABZR87_RS05880	0.44	-0.4
1,255,701	-		ABZR87_RS05880	0.44	+0.3
1,255,748	+		ABZR87_RS05880	0.49	+1.8
1,255,748	+		ABZR87_RS05880	0.49	+1.1
1,255,748	+		ABZR87_RS05880	0.49	+0.2
1,255,749	-		ABZR87_RS05880	0.49	+2.0
1,255,749	-		ABZR87_RS05880	0.49	+0.4
1,255,749	-		ABZR87_RS05880	0.49	+0.4
1,255,803	+		ABZR87_RS05880	0.53	+1.4
1,255,804	-		ABZR87_RS05880	0.53	+0.4
1,255,804	-		ABZR87_RS05880	0.53	-0.7
1,255,804	-		ABZR87_RS05880	0.53	-0.3
1,255,809	+		ABZR87_RS05880	0.54	+2.2
1,255,809	+		ABZR87_RS05880	0.54	+1.0
1,255,809	+		ABZR87_RS05880	0.54	+0.7
1,255,810	-		ABZR87_RS05880	0.54	+0.5
1,255,810	-		ABZR87_RS05880	0.54	+0.6
1,255,810	-		ABZR87_RS05880	0.54	+0.8
1,255,810	-		ABZR87_RS05880	0.54	+1.5
1,255,810	-		ABZR87_RS05880	0.54	-0.3
1,255,926	-		ABZR87_RS05880	0.64	+1.7