Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04255

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04250 and ABZR87_RS04255 are separated by 34 nucleotidesABZR87_RS04255 and ABZR87_RS04260 are separated by 93 nucleotidesABZR87_RS04260 and ABZR87_RS04265 are separated by 138 nucleotides ABZR87_RS04250: ABZR87_RS04250 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 888,223 to 889,224 _RS04250 ABZR87_RS04255: ABZR87_RS04255 - lysoplasmalogenase, at 889,259 to 890,023 _RS04255 ABZR87_RS04260: ABZR87_RS04260 - Lrp/AsnC family transcriptional regulator, at 890,117 to 890,593 _RS04260 ABZR87_RS04265: ABZR87_RS04265 - phenylalanine 4-monooxygenase, at 890,732 to 891,676 _RS04265 Position (kb) 889 890 891Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 888.361 kb on + strand, within ABZR87_RS04250at 888.361 kb on + strand, within ABZR87_RS04250at 888.361 kb on + strand, within ABZR87_RS04250at 888.362 kb on - strand, within ABZR87_RS04250at 888.362 kb on - strand, within ABZR87_RS04250at 888.362 kb on - strand, within ABZR87_RS04250at 888.443 kb on + strand, within ABZR87_RS04250at 888.443 kb on + strand, within ABZR87_RS04250at 888.444 kb on - strand, within ABZR87_RS04250at 888.444 kb on - strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.551 kb on + strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.552 kb on - strand, within ABZR87_RS04250at 888.615 kb on + strand, within ABZR87_RS04250at 888.615 kb on + strand, within ABZR87_RS04250at 888.719 kb on + strand, within ABZR87_RS04250at 888.719 kb on + strand, within ABZR87_RS04250at 888.719 kb on + strand, within ABZR87_RS04250at 888.719 kb on + strand, within ABZR87_RS04250at 888.719 kb on + strand, within ABZR87_RS04250at 888.719 kb on + strand, within ABZR87_RS04250at 888.720 kb on - strand, within ABZR87_RS04250at 888.722 kb on + strand, within ABZR87_RS04250at 888.722 kb on + strand, within ABZR87_RS04250at 888.723 kb on - strand, within ABZR87_RS04250at 888.723 kb on - strand, within ABZR87_RS04250at 888.723 kb on - strand, within ABZR87_RS04250at 888.723 kb on - strand, within ABZR87_RS04250at 888.723 kb on - strand, within ABZR87_RS04250at 888.723 kb on - strand, within ABZR87_RS04250at 889.178 kb on + strandat 889.178 kb on + strandat 889.178 kb on + strandat 889.178 kb on + strandat 889.179 kb on - strandat 889.179 kb on - strandat 889.179 kb on - strandat 889.179 kb on - strandat 889.260 kb on + strandat 889.260 kb on + strandat 889.260 kb on + strandat 889.260 kb on + strandat 889.260 kb on + strandat 889.260 kb on + strandat 889.261 kb on - strandat 889.261 kb on - strandat 889.261 kb on - strandat 889.261 kb on - strandat 889.261 kb on - strandat 889.335 kb on + strandat 889.335 kb on + strandat 889.336 kb on - strand, within ABZR87_RS04255at 889.336 kb on - strand, within ABZR87_RS04255at 889.336 kb on - strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.500 kb on + strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.501 kb on - strand, within ABZR87_RS04255at 889.542 kb on + strand, within ABZR87_RS04255at 889.543 kb on - strand, within ABZR87_RS04255at 889.641 kb on + strand, within ABZR87_RS04255at 889.641 kb on + strand, within ABZR87_RS04255at 889.641 kb on + strand, within ABZR87_RS04255at 889.641 kb on + strand, within ABZR87_RS04255at 889.642 kb on - strand, within ABZR87_RS04255at 889.642 kb on - strand, within ABZR87_RS04255at 889.905 kb on + strand, within ABZR87_RS04255at 889.905 kb on + strand, within ABZR87_RS04255at 889.905 kb on + strand, within ABZR87_RS04255at 889.906 kb on - strand, within ABZR87_RS04255at 889.906 kb on - strand, within ABZR87_RS04255at 890.054 kb on + strandat 890.054 kb on + strandat 890.054 kb on + strandat 890.055 kb on - strandat 890.055 kb on - strandat 890.118 kb on + strandat 890.118 kb on + strandat 890.118 kb on + strandat 890.118 kb on + strandat 890.118 kb on + strandat 890.119 kb on - strandat 890.119 kb on - strandat 890.119 kb on - strandat 890.171 kb on + strand, within ABZR87_RS04260at 890.171 kb on + strand, within ABZR87_RS04260at 890.171 kb on + strand, within ABZR87_RS04260at 890.171 kb on + strand, within ABZR87_RS04260at 890.171 kb on + strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.172 kb on - strand, within ABZR87_RS04260at 890.176 kb on + strand, within ABZR87_RS04260at 890.177 kb on - strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.274 kb on + strand, within ABZR87_RS04260at 890.275 kb on - strand, within ABZR87_RS04260at 890.275 kb on - strand, within ABZR87_RS04260at 890.275 kb on - strand, within ABZR87_RS04260at 890.275 kb on - strand, within ABZR87_RS04260at 890.298 kb on + strand, within ABZR87_RS04260at 890.299 kb on - strand, within ABZR87_RS04260at 890.299 kb on - strand, within ABZR87_RS04260at 890.691 kb on + strandat 890.691 kb on + strandat 890.692 kb on - strandat 890.692 kb on - strandat 890.692 kb on - strandat 890.692 kb on - strandat 890.692 kb on - strandat 890.727 kb on + strandat 890.727 kb on + strandat 890.728 kb on - strandat 890.728 kb on - strandat 890.728 kb on - strandat 890.728 kb on - strandat 890.728 kb on - strandat 890.888 kb on + strand, within ABZR87_RS04265at 890.889 kb on - strand, within ABZR87_RS04265at 890.925 kb on - strand, within ABZR87_RS04265at 890.946 kb on - strand, within ABZR87_RS04265at 890.947 kb on - strand, within ABZR87_RS04265

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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888,361 + ABZR87_RS04250 0.14 +0.6
888,361 + ABZR87_RS04250 0.14 -0.9
888,361 + ABZR87_RS04250 0.14 +1.6
888,362 - ABZR87_RS04250 0.14 +0.2
888,362 - ABZR87_RS04250 0.14 -0.4
888,362 - ABZR87_RS04250 0.14 +1.1
888,443 + ABZR87_RS04250 0.22 -0.5
888,443 + ABZR87_RS04250 0.22 -0.3
888,444 - ABZR87_RS04250 0.22 -0.4
888,444 - ABZR87_RS04250 0.22 -0.9
888,551 + ABZR87_RS04250 0.33 +0.8
888,551 + ABZR87_RS04250 0.33 -2.1
888,551 + ABZR87_RS04250 0.33 -0.7
888,551 + ABZR87_RS04250 0.33 -0.1
888,551 + ABZR87_RS04250 0.33 -1.1
888,551 + ABZR87_RS04250 0.33 +0.8
888,551 + ABZR87_RS04250 0.33 +0.8
888,552 - ABZR87_RS04250 0.33 +0.6
888,552 - ABZR87_RS04250 0.33 -1.4
888,552 - ABZR87_RS04250 0.33 +0.2
888,552 - ABZR87_RS04250 0.33 +2.0
888,552 - ABZR87_RS04250 0.33 +1.3
888,552 - ABZR87_RS04250 0.33 -0.9
888,552 - ABZR87_RS04250 0.33 -0.6
888,552 - ABZR87_RS04250 0.33 +1.9
888,615 + ABZR87_RS04250 0.39 -0.9
888,615 + ABZR87_RS04250 0.39 -0.4
888,719 + ABZR87_RS04250 0.50 -0.4
888,719 + ABZR87_RS04250 0.50 -1.0
888,719 + ABZR87_RS04250 0.50 +0.6
888,719 + ABZR87_RS04250 0.50 +1.2
888,719 + ABZR87_RS04250 0.50 +0.1
888,719 + ABZR87_RS04250 0.50 -0.2
888,720 - ABZR87_RS04250 0.50 -0.5
888,722 + ABZR87_RS04250 0.50 -0.4
888,722 + ABZR87_RS04250 0.50 -0.6
888,723 - ABZR87_RS04250 0.50 -0.5
888,723 - ABZR87_RS04250 0.50 +0.4
888,723 - ABZR87_RS04250 0.50 -0.3
888,723 - ABZR87_RS04250 0.50 +0.8
888,723 - ABZR87_RS04250 0.50 +0.3
888,723 - ABZR87_RS04250 0.50 -0.6
889,178 + -1.1
889,178 + -2.2
889,178 + -0.1
889,178 + +0.3
889,179 - -1.6
889,179 - -0.3
889,179 - -0.7
889,179 - +0.4
889,260 + +0.5
889,260 + +0.1
889,260 + +1.4
889,260 + +1.6
889,260 + +0.2
889,260 + +2.6
889,261 - -1.6
889,261 - -1.2
889,261 - +0.1
889,261 - -0.4
889,261 - -0.8
889,335 + +0.1
889,335 + +1.0
889,336 - ABZR87_RS04255 0.10 +0.1
889,336 - ABZR87_RS04255 0.10 +0.9
889,336 - ABZR87_RS04255 0.10 +0.7
889,500 + ABZR87_RS04255 0.32 +0.4
889,500 + ABZR87_RS04255 0.32 +0.8
889,500 + ABZR87_RS04255 0.32 +0.1
889,500 + ABZR87_RS04255 0.32 -0.7
889,500 + ABZR87_RS04255 0.32 +0.2
889,500 + ABZR87_RS04255 0.32 +0.6
889,500 + ABZR87_RS04255 0.32 +0.2
889,500 + ABZR87_RS04255 0.32 -0.2
889,501 - ABZR87_RS04255 0.32 +3.4
889,501 - ABZR87_RS04255 0.32 -1.1
889,501 - ABZR87_RS04255 0.32 +1.2
889,501 - ABZR87_RS04255 0.32 +1.2
889,501 - ABZR87_RS04255 0.32 -0.3
889,501 - ABZR87_RS04255 0.32 -0.4
889,501 - ABZR87_RS04255 0.32 -1.4
889,542 + ABZR87_RS04255 0.37 -0.4
889,543 - ABZR87_RS04255 0.37 -2.3
889,641 + ABZR87_RS04255 0.50 -1.7
889,641 + ABZR87_RS04255 0.50 +0.1
889,641 + ABZR87_RS04255 0.50 +1.4
889,641 + ABZR87_RS04255 0.50 -0.6
889,642 - ABZR87_RS04255 0.50 +1.0
889,642 - ABZR87_RS04255 0.50 +0.9
889,905 + ABZR87_RS04255 0.84 +1.0
889,905 + ABZR87_RS04255 0.84 -0.1
889,905 + ABZR87_RS04255 0.84 -0.7
889,906 - ABZR87_RS04255 0.85 +0.2
889,906 - ABZR87_RS04255 0.85 +4.7
890,054 + +1.0
890,054 + +0.6
890,054 + -0.8
890,055 - -1.4
890,055 - +1.3
890,118 + -1.7
890,118 + -0.1
890,118 + -0.7
890,118 + +0.8
890,118 + +0.3
890,119 - -0.2
890,119 - -0.1
890,119 - -0.5
890,171 + ABZR87_RS04260 0.11 -0.7
890,171 + ABZR87_RS04260 0.11 +0.1
890,171 + ABZR87_RS04260 0.11 -0.1
890,171 + ABZR87_RS04260 0.11 -0.8
890,171 + ABZR87_RS04260 0.11 -1.4
890,172 - ABZR87_RS04260 0.12 -1.3
890,172 - ABZR87_RS04260 0.12 -1.5
890,172 - ABZR87_RS04260 0.12 -1.1
890,172 - ABZR87_RS04260 0.12 +0.2
890,172 - ABZR87_RS04260 0.12 -1.3
890,172 - ABZR87_RS04260 0.12 -2.3
890,172 - ABZR87_RS04260 0.12 -2.2
890,172 - ABZR87_RS04260 0.12 -1.4
890,176 + ABZR87_RS04260 0.12 -0.2
890,177 - ABZR87_RS04260 0.13 -1.7
890,274 + ABZR87_RS04260 0.33 -0.2
890,274 + ABZR87_RS04260 0.33 -2.0
890,274 + ABZR87_RS04260 0.33 +0.4
890,274 + ABZR87_RS04260 0.33 -0.7
890,274 + ABZR87_RS04260 0.33 +0.6
890,274 + ABZR87_RS04260 0.33 -0.7
890,274 + ABZR87_RS04260 0.33 -2.6
890,275 - ABZR87_RS04260 0.33 -0.1
890,275 - ABZR87_RS04260 0.33 +1.4
890,275 - ABZR87_RS04260 0.33 -1.8
890,275 - ABZR87_RS04260 0.33 -1.6
890,298 + ABZR87_RS04260 0.38 -0.2
890,299 - ABZR87_RS04260 0.38 -1.7
890,299 - ABZR87_RS04260 0.38 -1.4
890,691 + -0.6
890,691 + +2.6
890,692 - -2.6
890,692 - -0.8
890,692 - -1.2
890,692 - -1.2
890,692 - +0.4
890,727 + -0.9
890,727 + +0.1
890,728 - -0.7
890,728 - -1.3
890,728 - +2.2
890,728 - -0.6
890,728 - +0.2
890,888 + ABZR87_RS04265 0.17 -0.3
890,889 - ABZR87_RS04265 0.17 -2.1
890,925 - ABZR87_RS04265 0.20 +0.4
890,946 - ABZR87_RS04265 0.23 +0.5
890,947 - ABZR87_RS04265 0.23 -0.7

Or see this region's nucleotide sequence