Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03795 and ABZR87_RS03800 overlap by 4 nucleotides ABZR87_RS03800 and ABZR87_RS03805 are separated by 147 nucleotides ABZR87_RS03805 and ABZR87_RS03810 are separated by 50 nucleotides ABZR87_RS03810 and ABZR87_RS03815 are separated by 35 nucleotides
ABZR87_RS03795: ABZR87_RS03795 - NAD(P)/FAD-dependent oxidoreductase, at 785,710 to 787,002
_RS03795
ABZR87_RS03800: ABZR87_RS03800 - hypothetical protein, at 786,999 to 787,355
_RS03800
ABZR87_RS03805: ABZR87_RS03805 - BON domain-containing protein, at 787,503 to 788,321
_RS03805
ABZR87_RS03810: ABZR87_RS03810 - YraN family protein, at 788,372 to 788,749
_RS03810
ABZR87_RS03815: ABZR87_RS03815 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 788,785 to 789,687
_RS03815
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.605 kb on + strand, within ABZR87_RS03795 at 786.605 kb on + strand, within ABZR87_RS03795 at 786.606 kb on - strand, within ABZR87_RS03795 at 786.713 kb on + strand, within ABZR87_RS03795 at 786.714 kb on - strand, within ABZR87_RS03795 at 786.714 kb on - strand, within ABZR87_RS03795 at 786.724 kb on - strand, within ABZR87_RS03795 at 786.724 kb on - strand, within ABZR87_RS03795 at 786.842 kb on + strand, within ABZR87_RS03795 at 786.842 kb on + strand, within ABZR87_RS03795 at 786.842 kb on + strand, within ABZR87_RS03795 at 786.842 kb on + strand, within ABZR87_RS03795 at 786.842 kb on + strand, within ABZR87_RS03795 at 786.843 kb on - strand, within ABZR87_RS03795 at 786.843 kb on - strand, within ABZR87_RS03795 at 786.843 kb on - strand, within ABZR87_RS03795 at 786.843 kb on - strand, within ABZR87_RS03795 at 786.843 kb on - strand, within ABZR87_RS03795 at 786.867 kb on - strand, within ABZR87_RS03795 at 786.867 kb on - strand, within ABZR87_RS03795 at 786.902 kb on - strand at 786.902 kb on - strand at 787.385 kb on + strand at 787.385 kb on + strand at 787.385 kb on + strand at 787.385 kb on + strand at 787.385 kb on + strand at 787.385 kb on + strand at 787.385 kb on + strand at 787.386 kb on - strand at 787.386 kb on - strand at 787.390 kb on + strand at 787.390 kb on + strand at 787.390 kb on + strand at 787.391 kb on - strand at 787.505 kb on - strand at 787.714 kb on + strand, within ABZR87_RS03805 at 787.714 kb on + strand, within ABZR87_RS03805 at 787.714 kb on + strand, within ABZR87_RS03805 at 787.714 kb on + strand, within ABZR87_RS03805 at 787.714 kb on + strand, within ABZR87_RS03805 at 787.714 kb on + strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.715 kb on - strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.900 kb on + strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.901 kb on - strand, within ABZR87_RS03805 at 787.994 kb on - strand, within ABZR87_RS03805 at 788.059 kb on + strand, within ABZR87_RS03805 at 788.059 kb on + strand, within ABZR87_RS03805 at 788.060 kb on - strand, within ABZR87_RS03805 at 788.092 kb on + strand, within ABZR87_RS03805 at 788.303 kb on + strand at 788.304 kb on - strand at 788.373 kb on + strand at 788.373 kb on + strand at 788.373 kb on + strand at 788.374 kb on - strand at 788.374 kb on - strand at 788.374 kb on - strand at 788.646 kb on + strand, within ABZR87_RS03810 at 788.646 kb on + strand, within ABZR87_RS03810 at 788.647 kb on - strand, within ABZR87_RS03810 at 788.647 kb on - strand, within ABZR87_RS03810 at 788.685 kb on + strand, within ABZR87_RS03810 at 788.686 kb on - strand, within ABZR87_RS03810 at 788.686 kb on - strand, within ABZR87_RS03810 at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.900 kb on - strand, within ABZR87_RS03815 at 788.947 kb on - strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.319 kb on + strand, within ABZR87_RS03815 at 789.319 kb on + strand, within ABZR87_RS03815 at 789.319 kb on + strand, within ABZR87_RS03815 at 789.320 kb on - strand, within ABZR87_RS03815 at 789.320 kb on - strand, within ABZR87_RS03815 at 789.320 kb on - strand, within ABZR87_RS03815
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 786,605 + ABZR87_RS03795 0.69 -0.9 786,605 + ABZR87_RS03795 0.69 -0.5 786,606 - ABZR87_RS03795 0.69 -1.1 786,713 + ABZR87_RS03795 0.78 +1.4 786,714 - ABZR87_RS03795 0.78 +2.5 786,714 - ABZR87_RS03795 0.78 -0.1 786,724 - ABZR87_RS03795 0.78 -0.4 786,724 - ABZR87_RS03795 0.78 -0.4 786,842 + ABZR87_RS03795 0.88 -0.4 786,842 + ABZR87_RS03795 0.88 +2.1 786,842 + ABZR87_RS03795 0.88 +0.2 786,842 + ABZR87_RS03795 0.88 -0.5 786,842 + ABZR87_RS03795 0.88 -0.2 786,843 - ABZR87_RS03795 0.88 -1.3 786,843 - ABZR87_RS03795 0.88 -0.3 786,843 - ABZR87_RS03795 0.88 +0.0 786,843 - ABZR87_RS03795 0.88 +0.7 786,843 - ABZR87_RS03795 0.88 -0.8 786,867 - ABZR87_RS03795 0.89 +0.5 786,867 - ABZR87_RS03795 0.89 -0.3 786,902 - -0.3 786,902 - +0.4 787,385 + +1.3 787,385 + -0.0 787,385 + +0.4 787,385 + -0.7 787,385 + +0.2 787,385 + -0.0 787,385 + -0.3 787,386 - -0.1 787,386 - +0.7 787,390 + +1.9 787,390 + -0.3 787,390 + +1.5 787,391 - +1.1 787,505 - +0.3 787,714 + ABZR87_RS03805 0.26 -0.7 787,714 + ABZR87_RS03805 0.26 +2.0 787,714 + ABZR87_RS03805 0.26 +0.7 787,714 + ABZR87_RS03805 0.26 +0.5 787,714 + ABZR87_RS03805 0.26 -3.0 787,714 + ABZR87_RS03805 0.26 +0.7 787,715 - ABZR87_RS03805 0.26 +0.5 787,715 - ABZR87_RS03805 0.26 -0.9 787,715 - ABZR87_RS03805 0.26 +2.3 787,715 - ABZR87_RS03805 0.26 +1.2 787,715 - ABZR87_RS03805 0.26 -0.8 787,715 - ABZR87_RS03805 0.26 +1.0 787,715 - ABZR87_RS03805 0.26 +1.4 787,715 - ABZR87_RS03805 0.26 +0.1 787,900 + ABZR87_RS03805 0.48 +1.6 787,900 + ABZR87_RS03805 0.48 -0.0 787,900 + ABZR87_RS03805 0.48 +0.1 787,900 + ABZR87_RS03805 0.48 -0.2 787,900 + ABZR87_RS03805 0.48 +0.2 787,900 + ABZR87_RS03805 0.48 +0.7 787,900 + ABZR87_RS03805 0.48 +0.9 787,900 + ABZR87_RS03805 0.48 -0.7 787,900 + ABZR87_RS03805 0.48 +0.6 787,900 + ABZR87_RS03805 0.48 -0.7 787,900 + ABZR87_RS03805 0.48 +0.1 787,900 + ABZR87_RS03805 0.48 -1.0 787,900 + ABZR87_RS03805 0.48 -0.5 787,900 + ABZR87_RS03805 0.48 -0.3 787,900 + ABZR87_RS03805 0.48 +1.4 787,900 + ABZR87_RS03805 0.48 +0.1 787,900 + ABZR87_RS03805 0.48 +0.1 787,900 + ABZR87_RS03805 0.48 +2.4 787,900 + ABZR87_RS03805 0.48 -1.0 787,900 + ABZR87_RS03805 0.48 +0.6 787,900 + ABZR87_RS03805 0.48 +0.9 787,900 + ABZR87_RS03805 0.48 -1.4 787,900 + ABZR87_RS03805 0.48 -1.1 787,900 + ABZR87_RS03805 0.48 +0.9 787,901 - ABZR87_RS03805 0.49 -0.3 787,901 - ABZR87_RS03805 0.49 +1.5 787,901 - ABZR87_RS03805 0.49 -0.0 787,901 - ABZR87_RS03805 0.49 +0.2 787,901 - ABZR87_RS03805 0.49 -0.0 787,901 - ABZR87_RS03805 0.49 +0.0 787,901 - ABZR87_RS03805 0.49 -0.2 787,901 - ABZR87_RS03805 0.49 +0.3 787,901 - ABZR87_RS03805 0.49 +0.8 787,901 - ABZR87_RS03805 0.49 +0.9 787,901 - ABZR87_RS03805 0.49 +2.6 787,901 - ABZR87_RS03805 0.49 -1.0 787,901 - ABZR87_RS03805 0.49 +0.6 787,901 - ABZR87_RS03805 0.49 -0.3 787,994 - ABZR87_RS03805 0.60 +0.7 788,059 + ABZR87_RS03805 0.68 -1.4 788,059 + ABZR87_RS03805 0.68 -1.1 788,060 - ABZR87_RS03805 0.68 -0.4 788,092 + ABZR87_RS03805 0.72 +0.1 788,303 + -0.7 788,304 - -0.8 788,373 + +1.1 788,373 + -0.7 788,373 + +0.1 788,374 - -1.0 788,374 - -0.8 788,374 - -0.1 788,646 + ABZR87_RS03810 0.72 -0.7 788,646 + ABZR87_RS03810 0.72 +0.5 788,647 - ABZR87_RS03810 0.73 -2.3 788,647 - ABZR87_RS03810 0.73 +0.4 788,685 + ABZR87_RS03810 0.83 +1.4 788,686 - ABZR87_RS03810 0.83 -2.5 788,686 - ABZR87_RS03810 0.83 +0.9 788,843 + -0.8 788,843 + -0.7 788,843 + -1.2 788,843 + -0.8 788,843 + +2.6 788,843 + +0.3 788,843 + -2.1 788,843 + -0.4 788,843 + +0.2 788,843 + -0.7 788,843 + +0.2 788,843 + +1.8 788,844 - +0.0 788,844 - +1.8 788,844 - -0.4 788,844 - +0.4 788,844 - +0.0 788,844 - +0.3 788,844 - -1.5 788,844 - -1.1 788,844 - +0.2 788,844 - -0.5 788,844 - -0.0 788,844 - -1.1 788,844 - +0.7 788,844 - -0.8 788,845 + +0.5 788,845 + +1.0 788,845 + +0.0 788,845 + -0.9 788,845 + +1.4 788,845 + -0.9 788,845 + +1.8 788,845 + +1.2 788,845 + -0.2 788,845 + -0.6 788,845 + -2.7 788,845 + -0.7 788,845 + -1.3 788,845 + +0.7 788,845 + -0.2 788,845 + -1.2 788,845 + +0.6 788,845 + +0.0 788,845 + +0.1 788,845 + +0.1 788,846 - -0.4 788,846 - -0.4 788,846 - +1.0 788,846 - -0.4 788,846 - +0.8 788,846 - -0.5 788,846 - -1.1 788,846 - +0.2 788,846 - -1.5 788,846 - -2.7 788,846 - +0.9 788,846 - -1.1 788,846 - +0.6 788,846 - +0.2 788,846 - -1.5 788,846 - -0.5 788,846 - -0.2 788,899 + ABZR87_RS03815 0.13 +0.1 788,899 + ABZR87_RS03815 0.13 +0.2 788,899 + ABZR87_RS03815 0.13 -0.8 788,899 + ABZR87_RS03815 0.13 -0.8 788,899 + ABZR87_RS03815 0.13 -0.0 788,900 - ABZR87_RS03815 0.13 -1.9 788,947 - ABZR87_RS03815 0.18 +1.1 789,067 + ABZR87_RS03815 0.31 +0.9 789,067 + ABZR87_RS03815 0.31 -0.2 789,067 + ABZR87_RS03815 0.31 -0.3 789,067 + ABZR87_RS03815 0.31 -0.8 789,067 + ABZR87_RS03815 0.31 -0.7 789,067 + ABZR87_RS03815 0.31 -0.9 789,067 + ABZR87_RS03815 0.31 +0.5 789,067 + ABZR87_RS03815 0.31 +0.5 789,067 + ABZR87_RS03815 0.31 -0.4 789,067 + ABZR87_RS03815 0.31 -0.5 789,067 + ABZR87_RS03815 0.31 +0.5 789,067 + ABZR87_RS03815 0.31 +0.3 789,067 + ABZR87_RS03815 0.31 +0.3 789,067 + ABZR87_RS03815 0.31 -1.0 789,067 + ABZR87_RS03815 0.31 -0.4 789,067 + ABZR87_RS03815 0.31 -0.3 789,068 - ABZR87_RS03815 0.31 +0.0 789,068 - ABZR87_RS03815 0.31 -0.4 789,068 - ABZR87_RS03815 0.31 -1.1 789,068 - ABZR87_RS03815 0.31 -1.4 789,319 + ABZR87_RS03815 0.59 +1.4 789,319 + ABZR87_RS03815 0.59 +2.2 789,319 + ABZR87_RS03815 0.59 -1.2 789,320 - ABZR87_RS03815 0.59 -0.9 789,320 - ABZR87_RS03815 0.59 +0.5 789,320 - ABZR87_RS03815 0.59 +1.2
Or see this region's nucleotide sequence