Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02905 and ABZR87_RS02910 are separated by 8 nucleotides ABZR87_RS02910 and ABZR87_RS02915 overlap by 4 nucleotides
ABZR87_RS02905: ABZR87_RS02905 - alpha-2-macroglobulin, at 603,300 to 608,084
_RS02905
ABZR87_RS02910: ABZR87_RS02910 - DUF1175 family protein, at 608,093 to 608,797
_RS02910
ABZR87_RS02915: ABZR87_RS02915 - DUF2138 domain-containing protein, at 608,794 to 610,623
_RS02915
Position (kb) 608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 607.129 kb on + strand, within ABZR87_RS02905 at 607.130 kb on - strand, within ABZR87_RS02905 at 607.130 kb on - strand, within ABZR87_RS02905 at 607.130 kb on - strand, within ABZR87_RS02905 at 607.130 kb on - strand, within ABZR87_RS02905 at 607.130 kb on - strand, within ABZR87_RS02905 at 607.203 kb on + strand, within ABZR87_RS02905 at 607.203 kb on + strand, within ABZR87_RS02905 at 607.203 kb on + strand, within ABZR87_RS02905 at 607.204 kb on - strand, within ABZR87_RS02905 at 607.332 kb on - strand, within ABZR87_RS02905 at 607.332 kb on - strand, within ABZR87_RS02905 at 607.369 kb on + strand, within ABZR87_RS02905 at 607.369 kb on + strand, within ABZR87_RS02905 at 607.369 kb on + strand, within ABZR87_RS02905 at 607.369 kb on + strand, within ABZR87_RS02905 at 607.369 kb on + strand, within ABZR87_RS02905 at 607.369 kb on + strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.370 kb on - strand, within ABZR87_RS02905 at 607.522 kb on + strand, within ABZR87_RS02905 at 607.522 kb on + strand, within ABZR87_RS02905 at 607.523 kb on - strand, within ABZR87_RS02905 at 607.523 kb on - strand, within ABZR87_RS02905 at 607.541 kb on - strand, within ABZR87_RS02905 at 607.541 kb on - strand, within ABZR87_RS02905 at 607.690 kb on + strand at 607.690 kb on + strand at 607.690 kb on + strand at 607.691 kb on - strand at 607.691 kb on - strand at 607.723 kb on + strand at 607.723 kb on + strand at 607.723 kb on + strand at 607.723 kb on + strand at 607.724 kb on - strand at 607.724 kb on - strand at 607.724 kb on - strand at 607.795 kb on + strand at 607.796 kb on - strand at 607.840 kb on + strand at 607.840 kb on + strand at 607.841 kb on - strand at 607.841 kb on - strand at 607.841 kb on - strand at 607.891 kb on + strand at 607.891 kb on + strand at 607.892 kb on - strand at 607.892 kb on - strand at 607.954 kb on - strand at 608.242 kb on - strand, within ABZR87_RS02910 at 608.250 kb on + strand, within ABZR87_RS02910 at 608.250 kb on + strand, within ABZR87_RS02910 at 608.250 kb on + strand, within ABZR87_RS02910 at 608.251 kb on - strand, within ABZR87_RS02910 at 608.251 kb on - strand, within ABZR87_RS02910 at 608.251 kb on - strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.382 kb on + strand, within ABZR87_RS02910 at 608.383 kb on - strand, within ABZR87_RS02910 at 608.383 kb on - strand, within ABZR87_RS02910 at 608.383 kb on - strand, within ABZR87_RS02910 at 608.662 kb on + strand, within ABZR87_RS02910 at 608.663 kb on - strand, within ABZR87_RS02910 at 608.714 kb on + strand, within ABZR87_RS02910 at 608.714 kb on + strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.715 kb on - strand, within ABZR87_RS02910 at 608.971 kb on + strand at 609.150 kb on + strand, within ABZR87_RS02915 at 609.263 kb on + strand, within ABZR87_RS02915 at 609.264 kb on - strand, within ABZR87_RS02915 at 609.316 kb on - strand, within ABZR87_RS02915 at 609.316 kb on - strand, within ABZR87_RS02915 at 609.321 kb on - strand, within ABZR87_RS02915 at 609.395 kb on + strand, within ABZR87_RS02915 at 609.395 kb on + strand, within ABZR87_RS02915 at 609.395 kb on + strand, within ABZR87_RS02915 at 609.396 kb on - strand, within ABZR87_RS02915 at 609.435 kb on - strand, within ABZR87_RS02915 at 609.435 kb on - strand, within ABZR87_RS02915 at 609.435 kb on - strand, within ABZR87_RS02915 at 609.548 kb on + strand, within ABZR87_RS02915 at 609.548 kb on + strand, within ABZR87_RS02915
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 607,129 + ABZR87_RS02905 0.80 +0.6 607,130 - ABZR87_RS02905 0.80 +0.4 607,130 - ABZR87_RS02905 0.80 -0.3 607,130 - ABZR87_RS02905 0.80 +0.6 607,130 - ABZR87_RS02905 0.80 +0.1 607,130 - ABZR87_RS02905 0.80 +0.9 607,203 + ABZR87_RS02905 0.82 -0.3 607,203 + ABZR87_RS02905 0.82 +0.0 607,203 + ABZR87_RS02905 0.82 +1.0 607,204 - ABZR87_RS02905 0.82 -0.4 607,332 - ABZR87_RS02905 0.84 +1.1 607,332 - ABZR87_RS02905 0.84 +0.7 607,369 + ABZR87_RS02905 0.85 -2.1 607,369 + ABZR87_RS02905 0.85 +1.5 607,369 + ABZR87_RS02905 0.85 +0.3 607,369 + ABZR87_RS02905 0.85 -0.5 607,369 + ABZR87_RS02905 0.85 +0.3 607,369 + ABZR87_RS02905 0.85 -2.2 607,370 - ABZR87_RS02905 0.85 -2.0 607,370 - ABZR87_RS02905 0.85 +0.5 607,370 - ABZR87_RS02905 0.85 +0.6 607,370 - ABZR87_RS02905 0.85 -1.5 607,370 - ABZR87_RS02905 0.85 -0.1 607,370 - ABZR87_RS02905 0.85 +1.4 607,370 - ABZR87_RS02905 0.85 +1.8 607,522 + ABZR87_RS02905 0.88 +0.9 607,522 + ABZR87_RS02905 0.88 +0.0 607,523 - ABZR87_RS02905 0.88 -0.6 607,523 - ABZR87_RS02905 0.88 +0.5 607,541 - ABZR87_RS02905 0.89 -0.3 607,541 - ABZR87_RS02905 0.89 -0.3 607,690 + -0.5 607,690 + +0.6 607,690 + -1.2 607,691 - -0.3 607,691 - -0.1 607,723 + +0.7 607,723 + -1.1 607,723 + +0.7 607,723 + -0.2 607,724 - +1.0 607,724 - -2.3 607,724 - +0.9 607,795 + +1.0 607,796 - -1.0 607,840 + +0.9 607,840 + -1.1 607,841 - +0.3 607,841 - +1.3 607,841 - +0.4 607,891 + +0.5 607,891 + +0.1 607,892 - -0.9 607,892 - -0.5 607,954 - +0.4 608,242 - ABZR87_RS02910 0.21 +0.1 608,250 + ABZR87_RS02910 0.22 +0.8 608,250 + ABZR87_RS02910 0.22 -1.8 608,250 + ABZR87_RS02910 0.22 -0.3 608,251 - ABZR87_RS02910 0.22 -0.8 608,251 - ABZR87_RS02910 0.22 +1.9 608,251 - ABZR87_RS02910 0.22 -0.2 608,382 + ABZR87_RS02910 0.41 -0.1 608,382 + ABZR87_RS02910 0.41 +0.3 608,382 + ABZR87_RS02910 0.41 -1.0 608,382 + ABZR87_RS02910 0.41 -2.0 608,382 + ABZR87_RS02910 0.41 -0.3 608,382 + ABZR87_RS02910 0.41 -0.3 608,382 + ABZR87_RS02910 0.41 +0.7 608,383 - ABZR87_RS02910 0.41 -0.2 608,383 - ABZR87_RS02910 0.41 +2.7 608,383 - ABZR87_RS02910 0.41 -1.3 608,662 + ABZR87_RS02910 0.81 -0.2 608,663 - ABZR87_RS02910 0.81 -0.5 608,714 + ABZR87_RS02910 0.88 +0.3 608,714 + ABZR87_RS02910 0.88 -0.8 608,715 - ABZR87_RS02910 0.88 +0.2 608,715 - ABZR87_RS02910 0.88 +0.9 608,715 - ABZR87_RS02910 0.88 +0.3 608,715 - ABZR87_RS02910 0.88 +0.9 608,715 - ABZR87_RS02910 0.88 -2.0 608,971 + -0.1 609,150 + ABZR87_RS02915 0.19 -1.3 609,263 + ABZR87_RS02915 0.26 -1.6 609,264 - ABZR87_RS02915 0.26 -0.4 609,316 - ABZR87_RS02915 0.29 -0.6 609,316 - ABZR87_RS02915 0.29 -0.3 609,321 - ABZR87_RS02915 0.29 +0.3 609,395 + ABZR87_RS02915 0.33 +1.0 609,395 + ABZR87_RS02915 0.33 +0.2 609,395 + ABZR87_RS02915 0.33 -1.7 609,396 - ABZR87_RS02915 0.33 -0.1 609,435 - ABZR87_RS02915 0.35 -0.7 609,435 - ABZR87_RS02915 0.35 +0.3 609,435 - ABZR87_RS02915 0.35 -0.8 609,548 + ABZR87_RS02915 0.41 -0.9 609,548 + ABZR87_RS02915 0.41 +0.4
Or see this region's nucleotide sequence