Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02340 and ABZR87_RS02345 are separated by 31 nucleotides ABZR87_RS02345 and ABZR87_RS02350 are separated by 224 nucleotides ABZR87_RS02350 and ABZR87_RS02355 are separated by 572 nucleotides ABZR87_RS02355 and ABZR87_RS02360 are separated by 73 nucleotides ABZR87_RS02360 and ABZR87_RS02365 are separated by 29 nucleotides
ABZR87_RS02340: ABZR87_RS02340 - Nramp family divalent metal transporter, at 501,383 to 503,026
_RS02340
ABZR87_RS02345: ABZR87_RS02345 - hypothetical protein, at 503,058 to 503,264
_RS02345
ABZR87_RS02350: ABZR87_RS02350 - carbohydrate porin, at 503,489 to 504,883
_RS02350
ABZR87_RS02355: ABZR87_RS02355 - hypothetical protein, at 505,456 to 505,680
_RS02355
ABZR87_RS02360: ABZR87_RS02360 - tRNA-Thr, at 505,754 to 505,829
_RS02360
ABZR87_RS02365: ABZR87_RS02365 - ClpXP protease specificity-enhancing factor, at 505,859 to 506,356
_RS02365
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.566 kb on + strand, within ABZR87_RS02340 at 502.567 kb on - strand, within ABZR87_RS02340 at 502.567 kb on - strand, within ABZR87_RS02340 at 502.660 kb on + strand, within ABZR87_RS02340 at 502.660 kb on + strand, within ABZR87_RS02340 at 502.661 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.788 kb on + strand, within ABZR87_RS02340 at 502.789 kb on - strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.813 kb on + strand, within ABZR87_RS02340 at 502.813 kb on + strand, within ABZR87_RS02340 at 502.814 kb on - strand, within ABZR87_RS02340 at 503.016 kb on - strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.060 kb on - strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.066 kb on - strand at 503.066 kb on - strand at 503.098 kb on + strand, within ABZR87_RS02345 at 503.099 kb on - strand, within ABZR87_RS02345 at 503.429 kb on + strand at 503.451 kb on - strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.484 kb on + strand at 503.484 kb on + strand at 503.485 kb on - strand at 503.491 kb on - strand at 503.491 kb on - strand at 503.491 kb on - strand at 503.511 kb on - strand at 503.547 kb on + strand at 503.547 kb on + strand at 503.563 kb on + strand at 503.564 kb on - strand at 503.613 kb on + strand at 503.613 kb on + strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.694 kb on + strand, within ABZR87_RS02350 at 503.695 kb on - strand, within ABZR87_RS02350 at 503.695 kb on - strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.824 kb on - strand, within ABZR87_RS02350 at 504.060 kb on + strand, within ABZR87_RS02350 at 504.061 kb on - strand, within ABZR87_RS02350 at 504.061 kb on - strand, within ABZR87_RS02350 at 504.091 kb on - strand, within ABZR87_RS02350 at 504.189 kb on + strand, within ABZR87_RS02350 at 504.190 kb on - strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.234 kb on + strand, within ABZR87_RS02350 at 504.297 kb on + strand, within ABZR87_RS02350 at 504.297 kb on + strand, within ABZR87_RS02350 at 504.297 kb on + strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.350 kb on + strand, within ABZR87_RS02350 at 504.350 kb on + strand, within ABZR87_RS02350 at 504.351 kb on - strand, within ABZR87_RS02350 at 504.584 kb on + strand, within ABZR87_RS02350 at 504.585 kb on - strand, within ABZR87_RS02350 at 504.596 kb on + strand, within ABZR87_RS02350 at 504.596 kb on + strand, within ABZR87_RS02350 at 504.621 kb on + strand, within ABZR87_RS02350 at 504.621 kb on + strand, within ABZR87_RS02350 at 504.621 kb on + strand, within ABZR87_RS02350 at 504.622 kb on - strand, within ABZR87_RS02350 at 504.622 kb on - strand, within ABZR87_RS02350 at 504.622 kb on - strand, within ABZR87_RS02350 at 504.663 kb on + strand, within ABZR87_RS02350 at 504.663 kb on + strand, within ABZR87_RS02350 at 504.663 kb on + strand, within ABZR87_RS02350 at 504.664 kb on - strand, within ABZR87_RS02350 at 504.664 kb on - strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.858 kb on + strand at 504.858 kb on + strand at 504.858 kb on + strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.916 kb on + strand at 504.916 kb on + strand at 504.917 kb on - strand at 504.983 kb on + strand at 504.984 kb on - strand at 504.984 kb on - strand at 504.984 kb on - strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.011 kb on - strand at 505.011 kb on - strand at 505.052 kb on - strand at 505.098 kb on + strand at 505.128 kb on + strand at 505.129 kb on - strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.159 kb on - strand at 505.162 kb on + strand at 505.162 kb on + strand at 505.162 kb on + strand at 505.163 kb on - strand at 505.163 kb on - strand at 505.179 kb on + strand at 505.180 kb on - strand at 505.180 kb on - strand at 505.285 kb on - strand at 505.334 kb on + strand at 505.350 kb on + strand at 505.350 kb on + strand at 505.351 kb on - strand at 505.351 kb on - strand at 505.616 kb on - strand, within ABZR87_RS02355 at 505.846 kb on - strand at 505.851 kb on - strand at 505.861 kb on - strand at 505.861 kb on - strand at 505.874 kb on + strand at 505.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 502,566 + ABZR87_RS02340 0.72 -0.1 502,567 - ABZR87_RS02340 0.72 -2.4 502,567 - ABZR87_RS02340 0.72 -0.7 502,660 + ABZR87_RS02340 0.78 +1.6 502,660 + ABZR87_RS02340 0.78 -0.7 502,661 - ABZR87_RS02340 0.78 +1.6 502,741 - ABZR87_RS02340 0.83 -0.6 502,741 - ABZR87_RS02340 0.83 -2.1 502,741 - ABZR87_RS02340 0.83 +1.0 502,741 - ABZR87_RS02340 0.83 -0.6 502,741 - ABZR87_RS02340 0.83 +0.3 502,775 + ABZR87_RS02340 0.85 -2.0 502,775 + ABZR87_RS02340 0.85 -0.2 502,775 + ABZR87_RS02340 0.85 -0.8 502,775 + ABZR87_RS02340 0.85 -0.5 502,776 - ABZR87_RS02340 0.85 -0.7 502,776 - ABZR87_RS02340 0.85 +1.0 502,776 - ABZR87_RS02340 0.85 +0.8 502,776 - ABZR87_RS02340 0.85 +0.5 502,788 + ABZR87_RS02340 0.85 +1.0 502,789 - ABZR87_RS02340 0.86 -0.4 502,809 + ABZR87_RS02340 0.87 +0.5 502,809 + ABZR87_RS02340 0.87 -0.4 502,809 + ABZR87_RS02340 0.87 +0.9 502,810 - ABZR87_RS02340 0.87 +0.2 502,810 - ABZR87_RS02340 0.87 -0.1 502,810 - ABZR87_RS02340 0.87 -0.5 502,810 - ABZR87_RS02340 0.87 -0.1 502,810 - ABZR87_RS02340 0.87 +0.7 502,813 + ABZR87_RS02340 0.87 -0.7 502,813 + ABZR87_RS02340 0.87 -0.3 502,814 - ABZR87_RS02340 0.87 -0.7 503,016 - +0.2 503,059 + -0.2 503,059 + -0.2 503,059 + -1.2 503,059 + -0.1 503,060 - -0.2 503,065 + -1.8 503,065 + +0.7 503,065 + +1.1 503,065 + +0.1 503,065 + -0.7 503,066 - -1.3 503,066 - -1.7 503,098 + ABZR87_RS02345 0.19 -0.5 503,099 - ABZR87_RS02345 0.20 -3.2 503,429 + +1.5 503,451 - -0.5 503,472 + +0.4 503,472 + +0.3 503,472 + +0.7 503,473 - -0.4 503,473 - -0.3 503,473 - +0.3 503,473 - -1.2 503,484 + -0.8 503,484 + -0.1 503,485 - +0.3 503,491 - -0.4 503,491 - -1.6 503,491 - -2.9 503,511 - -0.0 503,547 + +0.2 503,547 + +0.9 503,563 + +1.1 503,564 - +1.1 503,613 + -0.0 503,613 + +0.6 503,614 - -1.3 503,614 - +0.5 503,614 - -0.6 503,614 - +0.6 503,643 + ABZR87_RS02350 0.11 +0.8 503,643 + ABZR87_RS02350 0.11 -1.0 503,643 + ABZR87_RS02350 0.11 -1.6 503,643 + ABZR87_RS02350 0.11 -1.7 503,643 + ABZR87_RS02350 0.11 -0.1 503,694 + ABZR87_RS02350 0.15 -0.8 503,695 - ABZR87_RS02350 0.15 -0.5 503,695 - ABZR87_RS02350 0.15 +0.4 503,823 + ABZR87_RS02350 0.24 +0.8 503,823 + ABZR87_RS02350 0.24 -0.2 503,823 + ABZR87_RS02350 0.24 +0.3 503,823 + ABZR87_RS02350 0.24 -0.1 503,824 - ABZR87_RS02350 0.24 +0.1 504,060 + ABZR87_RS02350 0.41 -1.0 504,061 - ABZR87_RS02350 0.41 +0.4 504,061 - ABZR87_RS02350 0.41 -0.2 504,091 - ABZR87_RS02350 0.43 -0.6 504,189 + ABZR87_RS02350 0.50 -1.4 504,190 - ABZR87_RS02350 0.50 -1.5 504,213 + ABZR87_RS02350 0.52 +0.0 504,213 + ABZR87_RS02350 0.52 +1.5 504,213 + ABZR87_RS02350 0.52 +0.9 504,213 + ABZR87_RS02350 0.52 -0.6 504,214 - ABZR87_RS02350 0.52 -1.6 504,214 - ABZR87_RS02350 0.52 +0.6 504,214 - ABZR87_RS02350 0.52 +1.2 504,214 - ABZR87_RS02350 0.52 +1.1 504,234 + ABZR87_RS02350 0.53 -1.8 504,297 + ABZR87_RS02350 0.58 -0.2 504,297 + ABZR87_RS02350 0.58 -0.4 504,297 + ABZR87_RS02350 0.58 +0.1 504,298 - ABZR87_RS02350 0.58 -0.4 504,298 - ABZR87_RS02350 0.58 +1.1 504,298 - ABZR87_RS02350 0.58 -0.4 504,298 - ABZR87_RS02350 0.58 -1.7 504,298 - ABZR87_RS02350 0.58 -0.8 504,298 - ABZR87_RS02350 0.58 +2.0 504,350 + ABZR87_RS02350 0.62 -1.7 504,350 + ABZR87_RS02350 0.62 +0.2 504,351 - ABZR87_RS02350 0.62 -0.3 504,584 + ABZR87_RS02350 0.78 +0.3 504,585 - ABZR87_RS02350 0.79 -0.3 504,596 + ABZR87_RS02350 0.79 -1.6 504,596 + ABZR87_RS02350 0.79 -0.3 504,621 + ABZR87_RS02350 0.81 -0.3 504,621 + ABZR87_RS02350 0.81 +1.2 504,621 + ABZR87_RS02350 0.81 -0.5 504,622 - ABZR87_RS02350 0.81 -1.9 504,622 - ABZR87_RS02350 0.81 +0.7 504,622 - ABZR87_RS02350 0.81 +0.4 504,663 + ABZR87_RS02350 0.84 +1.0 504,663 + ABZR87_RS02350 0.84 -0.6 504,663 + ABZR87_RS02350 0.84 +0.5 504,664 - ABZR87_RS02350 0.84 +0.3 504,664 - ABZR87_RS02350 0.84 -0.2 504,699 + ABZR87_RS02350 0.87 -1.5 504,699 + ABZR87_RS02350 0.87 +0.3 504,699 + ABZR87_RS02350 0.87 -0.5 504,699 + ABZR87_RS02350 0.87 +0.2 504,699 + ABZR87_RS02350 0.87 -0.1 504,699 + ABZR87_RS02350 0.87 +0.3 504,699 + ABZR87_RS02350 0.87 -1.1 504,699 + ABZR87_RS02350 0.87 +0.5 504,699 + ABZR87_RS02350 0.87 -0.1 504,699 + ABZR87_RS02350 0.87 -0.4 504,699 + ABZR87_RS02350 0.87 -0.4 504,699 + ABZR87_RS02350 0.87 -1.6 504,699 + ABZR87_RS02350 0.87 +0.9 504,699 + ABZR87_RS02350 0.87 -0.0 504,699 + ABZR87_RS02350 0.87 +0.8 504,700 - ABZR87_RS02350 0.87 +0.0 504,700 - ABZR87_RS02350 0.87 -0.6 504,700 - ABZR87_RS02350 0.87 -0.2 504,700 - ABZR87_RS02350 0.87 +2.2 504,700 - ABZR87_RS02350 0.87 +1.2 504,700 - ABZR87_RS02350 0.87 -0.7 504,700 - ABZR87_RS02350 0.87 -1.8 504,700 - ABZR87_RS02350 0.87 -0.4 504,700 - ABZR87_RS02350 0.87 -1.8 504,700 - ABZR87_RS02350 0.87 -0.5 504,700 - ABZR87_RS02350 0.87 -0.9 504,700 - ABZR87_RS02350 0.87 -1.5 504,700 - ABZR87_RS02350 0.87 -0.9 504,700 - ABZR87_RS02350 0.87 +0.4 504,858 + -0.3 504,858 + -0.1 504,858 + -0.6 504,859 - -1.1 504,859 - +0.4 504,859 - +0.1 504,859 - +1.2 504,859 - +1.1 504,859 - +0.5 504,916 + -0.1 504,916 + -0.5 504,917 - +1.5 504,983 + +0.1 504,984 - +0.5 504,984 - -1.3 504,984 - -0.0 505,010 + -0.8 505,010 + +0.3 505,010 + +0.8 505,010 + +1.2 505,011 - +0.4 505,011 - -0.5 505,052 - -0.4 505,098 + -1.4 505,128 + -0.8 505,129 - -0.2 505,158 + -0.2 505,158 + +0.7 505,158 + +1.1 505,158 + +0.5 505,158 + -1.1 505,159 - +0.3 505,162 + -0.3 505,162 + +1.4 505,162 + +0.1 505,163 - -1.2 505,163 - -1.1 505,179 + +0.7 505,180 - +0.7 505,180 - -0.3 505,285 - -0.8 505,334 + -1.0 505,350 + +0.7 505,350 + -0.7 505,351 - -0.0 505,351 - +0.1 505,616 - ABZR87_RS02355 0.71 -0.3 505,846 - +0.5 505,851 - +0.1 505,861 - +0.8 505,861 - -0.3 505,874 + -0.9 505,875 - +1.2
Or see this region's nucleotide sequence