Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02005 and ABZR87_RS02010 are separated by 21 nucleotides ABZR87_RS02010 and ABZR87_RS02015 are separated by 43 nucleotides ABZR87_RS02015 and ABZR87_RS02020 are separated by 55 nucleotides
ABZR87_RS02005: ABZR87_RS02005 - MFS transporter, at 427,572 to 428,888
_RS02005
ABZR87_RS02010: ABZR87_RS02010 - alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB, at 428,910 to 429,344
_RS02010
ABZR87_RS02015: ABZR87_RS02015 - hemolysin III family protein, at 429,388 to 430,005
_RS02015
ABZR87_RS02020: ABZR87_RS02020 - long-chain fatty acid--CoA ligase, at 430,061 to 431,770
_RS02020
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 427.926 kb on + strand, within ABZR87_RS02005 at 427.926 kb on + strand, within ABZR87_RS02005 at 427.927 kb on - strand, within ABZR87_RS02005 at 428.140 kb on + strand, within ABZR87_RS02005 at 428.141 kb on - strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.217 kb on + strand, within ABZR87_RS02005 at 428.218 kb on - strand, within ABZR87_RS02005 at 428.218 kb on - strand, within ABZR87_RS02005 at 428.218 kb on - strand, within ABZR87_RS02005 at 428.218 kb on - strand, within ABZR87_RS02005 at 428.218 kb on - strand, within ABZR87_RS02005 at 428.218 kb on - strand, within ABZR87_RS02005 at 428.307 kb on - strand, within ABZR87_RS02005 at 428.358 kb on + strand, within ABZR87_RS02005 at 428.358 kb on + strand, within ABZR87_RS02005 at 428.358 kb on + strand, within ABZR87_RS02005 at 428.358 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.370 kb on + strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.371 kb on - strand, within ABZR87_RS02005 at 428.372 kb on + strand, within ABZR87_RS02005 at 428.372 kb on + strand, within ABZR87_RS02005 at 428.373 kb on - strand, within ABZR87_RS02005 at 428.373 kb on - strand, within ABZR87_RS02005 at 428.373 kb on - strand, within ABZR87_RS02005 at 428.373 kb on - strand, within ABZR87_RS02005 at 428.397 kb on + strand, within ABZR87_RS02005 at 428.398 kb on - strand, within ABZR87_RS02005 at 428.721 kb on + strand, within ABZR87_RS02005 at 428.721 kb on + strand, within ABZR87_RS02005 at 428.721 kb on + strand, within ABZR87_RS02005 at 428.722 kb on - strand, within ABZR87_RS02005 at 428.760 kb on + strand at 428.760 kb on + strand at 428.761 kb on - strand at 428.761 kb on - strand at 428.761 kb on - strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.811 kb on + strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.812 kb on - strand at 428.886 kb on + strand at 428.886 kb on + strand at 428.886 kb on + strand at 428.886 kb on + strand at 428.887 kb on - strand at 428.887 kb on - strand at 428.887 kb on - strand at 428.887 kb on - strand at 428.887 kb on - strand at 428.887 kb on - strand at 428.899 kb on + strand at 428.900 kb on - strand at 428.900 kb on - strand at 428.912 kb on - strand at 429.000 kb on - strand, within ABZR87_RS02010 at 429.000 kb on - strand, within ABZR87_RS02010 at 429.000 kb on - strand, within ABZR87_RS02010 at 429.220 kb on + strand, within ABZR87_RS02010 at 429.235 kb on - strand, within ABZR87_RS02010 at 429.305 kb on + strand at 429.356 kb on - strand at 429.356 kb on - strand at 429.387 kb on + strand at 429.387 kb on + strand at 429.387 kb on + strand at 429.387 kb on + strand at 429.387 kb on + strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.391 kb on + strand at 429.391 kb on + strand at 429.392 kb on - strand at 429.392 kb on - strand at 429.467 kb on + strand, within ABZR87_RS02015 at 429.467 kb on + strand, within ABZR87_RS02015 at 429.468 kb on - strand, within ABZR87_RS02015 at 429.520 kb on + strand, within ABZR87_RS02015 at 429.520 kb on + strand, within ABZR87_RS02015 at 429.544 kb on + strand, within ABZR87_RS02015 at 429.544 kb on + strand, within ABZR87_RS02015 at 429.545 kb on - strand, within ABZR87_RS02015 at 429.545 kb on - strand, within ABZR87_RS02015 at 429.545 kb on - strand, within ABZR87_RS02015 at 429.545 kb on - strand, within ABZR87_RS02015 at 429.545 kb on - strand, within ABZR87_RS02015 at 429.562 kb on + strand, within ABZR87_RS02015 at 429.562 kb on + strand, within ABZR87_RS02015 at 429.562 kb on + strand, within ABZR87_RS02015 at 429.562 kb on + strand, within ABZR87_RS02015 at 429.563 kb on - strand, within ABZR87_RS02015 at 429.610 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.622 kb on + strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.623 kb on - strand, within ABZR87_RS02015 at 429.639 kb on + strand, within ABZR87_RS02015 at 429.643 kb on + strand, within ABZR87_RS02015 at 429.643 kb on + strand, within ABZR87_RS02015 at 429.643 kb on + strand, within ABZR87_RS02015 at 429.644 kb on - strand, within ABZR87_RS02015 at 429.644 kb on - strand, within ABZR87_RS02015 at 429.644 kb on - strand, within ABZR87_RS02015 at 429.644 kb on - strand, within ABZR87_RS02015 at 429.644 kb on - strand, within ABZR87_RS02015 at 429.781 kb on + strand, within ABZR87_RS02015 at 429.781 kb on + strand, within ABZR87_RS02015 at 429.781 kb on + strand, within ABZR87_RS02015 at 429.781 kb on + strand, within ABZR87_RS02015 at 429.781 kb on + strand, within ABZR87_RS02015 at 429.782 kb on - strand, within ABZR87_RS02015 at 429.782 kb on - strand, within ABZR87_RS02015 at 429.782 kb on - strand, within ABZR87_RS02015 at 429.782 kb on - strand, within ABZR87_RS02015 at 429.782 kb on - strand, within ABZR87_RS02015 at 429.880 kb on + strand, within ABZR87_RS02015 at 429.881 kb on - strand, within ABZR87_RS02015 at 429.994 kb on + strand at 429.995 kb on - strand at 429.995 kb on - strand at 429.995 kb on - strand at 430.052 kb on + strand at 430.053 kb on - strand at 430.167 kb on + strand at 430.168 kb on - strand at 430.168 kb on - strand at 430.341 kb on + strand, within ABZR87_RS02020 at 430.342 kb on - strand, within ABZR87_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 427,926 + ABZR87_RS02005 0.27 +0.2 427,926 + ABZR87_RS02005 0.27 +1.0 427,927 - ABZR87_RS02005 0.27 +3.9 428,140 + ABZR87_RS02005 0.43 +0.5 428,141 - ABZR87_RS02005 0.43 +0.5 428,217 + ABZR87_RS02005 0.49 -0.2 428,217 + ABZR87_RS02005 0.49 -2.1 428,217 + ABZR87_RS02005 0.49 -0.9 428,217 + ABZR87_RS02005 0.49 +0.3 428,217 + ABZR87_RS02005 0.49 +1.9 428,217 + ABZR87_RS02005 0.49 -0.7 428,217 + ABZR87_RS02005 0.49 +0.1 428,217 + ABZR87_RS02005 0.49 -0.3 428,217 + ABZR87_RS02005 0.49 +0.3 428,217 + ABZR87_RS02005 0.49 +0.2 428,218 - ABZR87_RS02005 0.49 -0.1 428,218 - ABZR87_RS02005 0.49 +0.2 428,218 - ABZR87_RS02005 0.49 +1.3 428,218 - ABZR87_RS02005 0.49 -1.2 428,218 - ABZR87_RS02005 0.49 -0.3 428,218 - ABZR87_RS02005 0.49 +0.4 428,307 - ABZR87_RS02005 0.56 +0.5 428,358 + ABZR87_RS02005 0.60 +0.1 428,358 + ABZR87_RS02005 0.60 +1.7 428,358 + ABZR87_RS02005 0.60 +0.7 428,358 + ABZR87_RS02005 0.60 +0.4 428,370 + ABZR87_RS02005 0.61 +0.0 428,370 + ABZR87_RS02005 0.61 -0.8 428,370 + ABZR87_RS02005 0.61 -1.0 428,370 + ABZR87_RS02005 0.61 -1.5 428,370 + ABZR87_RS02005 0.61 +0.3 428,370 + ABZR87_RS02005 0.61 +1.6 428,370 + ABZR87_RS02005 0.61 +0.6 428,370 + ABZR87_RS02005 0.61 -0.1 428,371 - ABZR87_RS02005 0.61 +0.6 428,371 - ABZR87_RS02005 0.61 -0.4 428,371 - ABZR87_RS02005 0.61 +0.4 428,371 - ABZR87_RS02005 0.61 -0.4 428,371 - ABZR87_RS02005 0.61 +0.2 428,371 - ABZR87_RS02005 0.61 +1.9 428,371 - ABZR87_RS02005 0.61 +1.3 428,371 - ABZR87_RS02005 0.61 -0.1 428,371 - ABZR87_RS02005 0.61 -0.2 428,371 - ABZR87_RS02005 0.61 -0.2 428,371 - ABZR87_RS02005 0.61 -0.5 428,371 - ABZR87_RS02005 0.61 -1.0 428,372 + ABZR87_RS02005 0.61 +1.0 428,372 + ABZR87_RS02005 0.61 -0.8 428,373 - ABZR87_RS02005 0.61 -0.7 428,373 - ABZR87_RS02005 0.61 -0.9 428,373 - ABZR87_RS02005 0.61 -1.1 428,373 - ABZR87_RS02005 0.61 +0.4 428,397 + ABZR87_RS02005 0.63 -0.4 428,398 - ABZR87_RS02005 0.63 -1.9 428,721 + ABZR87_RS02005 0.87 -1.6 428,721 + ABZR87_RS02005 0.87 -1.3 428,721 + ABZR87_RS02005 0.87 +0.5 428,722 - ABZR87_RS02005 0.87 -0.9 428,760 + +0.6 428,760 + +0.2 428,761 - +1.9 428,761 - +0.5 428,761 - +0.5 428,811 + -0.7 428,811 + -0.8 428,811 + -0.9 428,811 + -0.0 428,811 + +0.7 428,811 + -0.5 428,811 + +0.1 428,811 + -0.5 428,811 + -0.3 428,811 + -1.8 428,811 + +0.4 428,811 + +1.2 428,811 + +0.0 428,811 + +0.0 428,811 + -1.2 428,811 + -0.2 428,811 + +0.5 428,811 + -0.0 428,811 + -0.1 428,811 + -0.5 428,811 + +0.7 428,811 + +1.7 428,811 + -0.0 428,811 + -0.8 428,811 + -0.4 428,811 + -0.0 428,811 + -0.2 428,812 - -2.0 428,812 - -0.2 428,812 - -0.2 428,812 - -0.2 428,812 - +0.4 428,812 - -0.5 428,812 - +0.0 428,812 - +0.1 428,812 - +0.2 428,812 - +1.6 428,812 - +0.2 428,812 - -0.2 428,812 - +1.2 428,812 - +0.7 428,812 - +0.3 428,812 - +1.1 428,886 + -1.0 428,886 + -1.3 428,886 + -2.1 428,886 + -0.5 428,887 - +0.4 428,887 - +0.3 428,887 - +1.6 428,887 - -2.5 428,887 - +1.2 428,887 - +0.5 428,899 + -0.8 428,900 - -1.4 428,900 - +0.5 428,912 - +0.1 429,000 - ABZR87_RS02010 0.21 +0.9 429,000 - ABZR87_RS02010 0.21 +1.0 429,000 - ABZR87_RS02010 0.21 -1.2 429,220 + ABZR87_RS02010 0.71 +0.5 429,235 - ABZR87_RS02010 0.75 +0.5 429,305 + +1.7 429,356 - -1.8 429,356 - -0.4 429,387 + +1.0 429,387 + -0.3 429,387 + -0.4 429,387 + +0.1 429,387 + -0.6 429,388 - +0.5 429,388 - +1.1 429,388 - -0.8 429,388 - -0.8 429,388 - -0.7 429,388 - +0.8 429,391 + -1.0 429,391 + +1.9 429,392 - +1.0 429,392 - +1.1 429,467 + ABZR87_RS02015 0.13 -0.1 429,467 + ABZR87_RS02015 0.13 +1.3 429,468 - ABZR87_RS02015 0.13 -0.3 429,520 + ABZR87_RS02015 0.21 +0.1 429,520 + ABZR87_RS02015 0.21 +0.7 429,544 + ABZR87_RS02015 0.25 +1.0 429,544 + ABZR87_RS02015 0.25 -1.2 429,545 - ABZR87_RS02015 0.25 -0.4 429,545 - ABZR87_RS02015 0.25 -0.4 429,545 - ABZR87_RS02015 0.25 -1.6 429,545 - ABZR87_RS02015 0.25 -0.2 429,545 - ABZR87_RS02015 0.25 +1.3 429,562 + ABZR87_RS02015 0.28 +0.2 429,562 + ABZR87_RS02015 0.28 -0.6 429,562 + ABZR87_RS02015 0.28 -1.5 429,562 + ABZR87_RS02015 0.28 +1.7 429,563 - ABZR87_RS02015 0.28 +0.9 429,610 + ABZR87_RS02015 0.36 -1.0 429,622 + ABZR87_RS02015 0.38 -1.4 429,622 + ABZR87_RS02015 0.38 -1.5 429,622 + ABZR87_RS02015 0.38 -1.0 429,622 + ABZR87_RS02015 0.38 -0.1 429,622 + ABZR87_RS02015 0.38 -1.3 429,622 + ABZR87_RS02015 0.38 -0.6 429,622 + ABZR87_RS02015 0.38 +0.2 429,622 + ABZR87_RS02015 0.38 +0.4 429,622 + ABZR87_RS02015 0.38 +0.4 429,623 - ABZR87_RS02015 0.38 +0.4 429,623 - ABZR87_RS02015 0.38 -0.5 429,623 - ABZR87_RS02015 0.38 -0.6 429,623 - ABZR87_RS02015 0.38 -0.2 429,623 - ABZR87_RS02015 0.38 +0.9 429,623 - ABZR87_RS02015 0.38 -1.0 429,623 - ABZR87_RS02015 0.38 -1.0 429,623 - ABZR87_RS02015 0.38 -0.1 429,623 - ABZR87_RS02015 0.38 -2.1 429,623 - ABZR87_RS02015 0.38 +0.2 429,623 - ABZR87_RS02015 0.38 -0.6 429,623 - ABZR87_RS02015 0.38 -2.7 429,623 - ABZR87_RS02015 0.38 -1.5 429,623 - ABZR87_RS02015 0.38 -0.8 429,639 + ABZR87_RS02015 0.41 -0.4 429,643 + ABZR87_RS02015 0.41 -1.2 429,643 + ABZR87_RS02015 0.41 +0.2 429,643 + ABZR87_RS02015 0.41 +0.1 429,644 - ABZR87_RS02015 0.41 -1.7 429,644 - ABZR87_RS02015 0.41 -0.7 429,644 - ABZR87_RS02015 0.41 +1.4 429,644 - ABZR87_RS02015 0.41 -0.5 429,644 - ABZR87_RS02015 0.41 -1.4 429,781 + ABZR87_RS02015 0.64 -2.9 429,781 + ABZR87_RS02015 0.64 +0.5 429,781 + ABZR87_RS02015 0.64 -1.1 429,781 + ABZR87_RS02015 0.64 +1.0 429,781 + ABZR87_RS02015 0.64 +0.5 429,782 - ABZR87_RS02015 0.64 -1.0 429,782 - ABZR87_RS02015 0.64 -1.2 429,782 - ABZR87_RS02015 0.64 +0.6 429,782 - ABZR87_RS02015 0.64 -0.8 429,782 - ABZR87_RS02015 0.64 +0.4 429,880 + ABZR87_RS02015 0.80 +0.5 429,881 - ABZR87_RS02015 0.80 +0.7 429,994 + -0.4 429,995 - +0.1 429,995 - -0.3 429,995 - +1.1 430,052 + -0.1 430,053 - -0.6 430,167 + +0.5 430,168 - +0.6 430,168 - +0.2 430,341 + ABZR87_RS02020 0.16 +2.7 430,342 - ABZR87_RS02020 0.16 +0.4
Or see this region's nucleotide sequence