Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01765 and ABZR87_RS01770 are separated by 173 nucleotides ABZR87_RS01770 and ABZR87_RS01775 are separated by 68 nucleotides ABZR87_RS01775 and ABZR87_RS01780 are separated by 65 nucleotides
ABZR87_RS01765: ABZR87_RS01765 - cytochrome c biogenesis protein CcsA, at 376,051 to 376,962
_RS01765
ABZR87_RS01770: ABZR87_RS01770 - signal recognition particle protein, at 377,136 to 378,551
_RS01770
ABZR87_RS01775: ABZR87_RS01775 - hypoxanthine-guanine phosphoribosyltransferase, at 378,620 to 379,168
_RS01775
ABZR87_RS01780: ABZR87_RS01780 - MarC family protein, at 379,234 to 379,827
_RS01780
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1
2 at 376.478 kb on + strand, within ABZR87_RS01765 at 376.478 kb on + strand, within ABZR87_RS01765 at 376.530 kb on - strand, within ABZR87_RS01765 at 376.530 kb on - strand, within ABZR87_RS01765 at 376.682 kb on + strand, within ABZR87_RS01765 at 376.925 kb on + strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.947 kb on - strand at 376.951 kb on + strand at 376.951 kb on + strand at 376.951 kb on + strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 377.052 kb on + strand at 377.052 kb on + strand at 377.052 kb on + strand at 378.830 kb on + strand, within ABZR87_RS01775 at 378.830 kb on + strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.916 kb on + strand, within ABZR87_RS01775 at 378.917 kb on - strand, within ABZR87_RS01775 at 379.008 kb on - strand, within ABZR87_RS01775 at 379.055 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.092 kb on - strand, within ABZR87_RS01775 at 379.124 kb on + strand at 379.125 kb on - strand at 379.125 kb on - strand at 379.405 kb on + strand, within ABZR87_RS01780 at 379.405 kb on + strand, within ABZR87_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 376,478 + ABZR87_RS01765 0.47 -0.5 376,478 + ABZR87_RS01765 0.47 -1.2 376,530 - ABZR87_RS01765 0.53 -0.8 376,530 - ABZR87_RS01765 0.53 -1.6 376,682 + ABZR87_RS01765 0.69 -0.4 376,925 + +2.3 376,926 - -1.1 376,926 - +1.2 376,926 - +1.6 376,946 + -0.2 376,946 + +1.4 376,946 + -0.2 376,946 + +0.9 376,947 - -1.4 376,951 + +0.5 376,951 + -1.5 376,951 + -0.8 376,952 - -1.5 376,952 - -1.0 376,952 - +1.1 376,952 - -0.5 376,952 - +1.6 376,952 - +0.3 377,052 + -0.6 377,052 + -1.3 377,052 + -0.1 378,830 + ABZR87_RS01775 0.38 +0.4 378,830 + ABZR87_RS01775 0.38 -0.1 378,831 - ABZR87_RS01775 0.38 +1.1 378,831 - ABZR87_RS01775 0.38 -1.3 378,831 - ABZR87_RS01775 0.38 +0.8 378,916 + ABZR87_RS01775 0.54 -0.1 378,917 - ABZR87_RS01775 0.54 +0.6 379,008 - ABZR87_RS01775 0.71 +0.2 379,055 + ABZR87_RS01775 0.79 +0.7 379,091 + ABZR87_RS01775 0.86 +1.6 379,091 + ABZR87_RS01775 0.86 +0.9 379,091 + ABZR87_RS01775 0.86 -0.1 379,092 - ABZR87_RS01775 0.86 -0.6 379,124 + -1.1 379,125 - +0.1 379,125 - -2.1 379,405 + ABZR87_RS01780 0.29 +0.5 379,405 + ABZR87_RS01780 0.29 +1.8
Or see this region's nucleotide sequence