Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01445

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01440 and ABZR87_RS01445 are separated by 115 nucleotidesABZR87_RS01445 and ABZR87_RS01450 are separated by 20 nucleotidesABZR87_RS01450 and ABZR87_RS01455 overlap by 4 nucleotides ABZR87_RS01440: ABZR87_RS01440 - transketolase, at 302,275 to 304,290 _RS01440 ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554 _RS01445 ABZR87_RS01450: ABZR87_RS01450 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 305,575 to 306,201 _RS01450 ABZR87_RS01455: ABZR87_RS01455 - SDR family oxidoreductase, at 306,198 to 307,004 _RS01455 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.381 kb on + strandat 304.381 kb on + strandat 304.382 kb on - strandat 304.382 kb on - strandat 304.382 kb on - strandat 304.407 kb on + strandat 304.407 kb on + strandat 304.408 kb on - strandat 304.408 kb on - strandat 304.539 kb on + strand, within ABZR87_RS01445at 304.539 kb on + strand, within ABZR87_RS01445at 304.539 kb on + strand, within ABZR87_RS01445at 304.539 kb on + strand, within ABZR87_RS01445at 304.539 kb on + strand, within ABZR87_RS01445at 304.539 kb on + strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.540 kb on - strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.605 kb on + strand, within ABZR87_RS01445at 304.605 kb on + strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.722 kb on + strand, within ABZR87_RS01445at 304.723 kb on - strand, within ABZR87_RS01445at 304.723 kb on - strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.897 kb on - strand, within ABZR87_RS01445at 304.897 kb on - strand, within ABZR87_RS01445at 304.934 kb on - strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.206 kb on - strand, within ABZR87_RS01445at 305.206 kb on - strand, within ABZR87_RS01445at 305.206 kb on - strand, within ABZR87_RS01445at 305.248 kb on - strand, within ABZR87_RS01445at 305.338 kb on - strand, within ABZR87_RS01445at 305.352 kb on + strand, within ABZR87_RS01445at 305.352 kb on + strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.403 kb on + strand, within ABZR87_RS01445at 305.404 kb on - strand, within ABZR87_RS01445at 305.404 kb on - strand, within ABZR87_RS01445at 305.529 kb on + strandat 305.529 kb on + strandat 305.529 kb on + strandat 305.530 kb on - strandat 305.530 kb on - strandat 305.603 kb on + strandat 305.664 kb on - strand, within ABZR87_RS01450at 305.664 kb on - strand, within ABZR87_RS01450at 305.709 kb on - strand, within ABZR87_RS01450at 305.793 kb on - strand, within ABZR87_RS01450at 306.209 kb on - strandat 306.293 kb on - strand, within ABZR87_RS01455at 306.293 kb on - strand, within ABZR87_RS01455at 306.454 kb on + strand, within ABZR87_RS01455at 306.455 kb on - strand, within ABZR87_RS01455at 306.457 kb on + strand, within ABZR87_RS01455

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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304,381 + -0.1
304,381 + -1.7
304,382 - +0.2
304,382 - +1.6
304,382 - -0.8
304,407 + -0.6
304,407 + -0.9
304,408 - +0.7
304,408 - +1.6
304,539 + ABZR87_RS01445 0.12 -0.9
304,539 + ABZR87_RS01445 0.12 +0.3
304,539 + ABZR87_RS01445 0.12 +0.1
304,539 + ABZR87_RS01445 0.12 -0.4
304,539 + ABZR87_RS01445 0.12 +0.8
304,539 + ABZR87_RS01445 0.12 +0.7
304,540 - ABZR87_RS01445 0.12 +0.1
304,540 - ABZR87_RS01445 0.12 +0.6
304,540 - ABZR87_RS01445 0.12 -1.2
304,540 - ABZR87_RS01445 0.12 -1.1
304,540 - ABZR87_RS01445 0.12 +0.1
304,540 - ABZR87_RS01445 0.12 +1.9
304,540 - ABZR87_RS01445 0.12 -0.1
304,578 + ABZR87_RS01445 0.15 -0.9
304,578 + ABZR87_RS01445 0.15 +0.2
304,578 + ABZR87_RS01445 0.15 +0.6
304,578 + ABZR87_RS01445 0.15 +0.4
304,579 - ABZR87_RS01445 0.15 -1.8
304,579 - ABZR87_RS01445 0.15 -0.1
304,579 - ABZR87_RS01445 0.15 +0.7
304,579 - ABZR87_RS01445 0.15 +0.4
304,579 - ABZR87_RS01445 0.15 +0.3
304,605 + ABZR87_RS01445 0.17 -0.6
304,605 + ABZR87_RS01445 0.17 +0.1
304,606 - ABZR87_RS01445 0.17 +0.2
304,606 - ABZR87_RS01445 0.17 +0.5
304,606 - ABZR87_RS01445 0.17 +0.1
304,606 - ABZR87_RS01445 0.17 -0.4
304,722 + ABZR87_RS01445 0.28 -1.6
304,723 - ABZR87_RS01445 0.28 +1.2
304,723 - ABZR87_RS01445 0.28 +2.6
304,896 + ABZR87_RS01445 0.43 +0.2
304,896 + ABZR87_RS01445 0.43 +0.1
304,896 + ABZR87_RS01445 0.43 -0.2
304,896 + ABZR87_RS01445 0.43 +0.4
304,897 - ABZR87_RS01445 0.43 +1.5
304,897 - ABZR87_RS01445 0.43 +0.6
304,934 - ABZR87_RS01445 0.46 -0.6
305,205 + ABZR87_RS01445 0.70 -0.6
305,205 + ABZR87_RS01445 0.70 +0.3
305,205 + ABZR87_RS01445 0.70 +1.3
305,205 + ABZR87_RS01445 0.70 +1.4
305,206 - ABZR87_RS01445 0.70 +1.5
305,206 - ABZR87_RS01445 0.70 +1.0
305,206 - ABZR87_RS01445 0.70 +1.0
305,248 - ABZR87_RS01445 0.73 -0.0
305,338 - ABZR87_RS01445 0.81 -0.2
305,352 + ABZR87_RS01445 0.82 +1.7
305,352 + ABZR87_RS01445 0.82 +2.3
305,353 - ABZR87_RS01445 0.82 -1.4
305,353 - ABZR87_RS01445 0.82 -0.5
305,353 - ABZR87_RS01445 0.82 -1.0
305,353 - ABZR87_RS01445 0.82 +0.1
305,403 + ABZR87_RS01445 0.87 +0.2
305,404 - ABZR87_RS01445 0.87 +0.2
305,404 - ABZR87_RS01445 0.87 +0.0
305,529 + -0.5
305,529 + -1.4
305,529 + -1.7
305,530 - +1.4
305,530 - -0.6
305,603 + +2.1
305,664 - ABZR87_RS01450 0.14 -2.8
305,664 - ABZR87_RS01450 0.14 -2.8
305,709 - ABZR87_RS01450 0.21 -1.6
305,793 - ABZR87_RS01450 0.35 -1.6
306,209 - +0.8
306,293 - ABZR87_RS01455 0.12 -0.3
306,293 - ABZR87_RS01455 0.12 -0.8
306,454 + ABZR87_RS01455 0.32 -1.6
306,455 - ABZR87_RS01455 0.32 +0.7
306,457 + ABZR87_RS01455 0.32 -1.3

Or see this region's nucleotide sequence