Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00775 and ABZR87_RS00780 are separated by 261 nucleotides ABZR87_RS00780 and ABZR87_RS00785 are separated by 140 nucleotides
ABZR87_RS00775: ABZR87_RS00775 - tRNA epoxyqueuosine(34) reductase QueG, at 155,860 to 157,011
_RS00775
ABZR87_RS00780: ABZR87_RS00780 - chalcone isomerase family protein, at 157,273 to 157,923
_RS00780
ABZR87_RS00785: ABZR87_RS00785 - tripartite tricarboxylate transporter substrate binding protein BugE, at 158,064 to 159,023
_RS00785
Position (kb) 157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.281 kb on + strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.337 kb on + strand, within ABZR87_RS00775 at 156.350 kb on + strand, within ABZR87_RS00775 at 156.351 kb on - strand, within ABZR87_RS00775 at 156.390 kb on + strand, within ABZR87_RS00775 at 156.577 kb on + strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.673 kb on + strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 157.067 kb on + strand at 157.067 kb on + strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.101 kb on + strand at 157.123 kb on + strand at 157.147 kb on + strand at 157.147 kb on + strand at 157.148 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.172 kb on + strand at 157.172 kb on + strand at 157.173 kb on - strand at 157.180 kb on - strand at 157.182 kb on + strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.251 kb on + strand at 157.251 kb on + strand at 157.257 kb on + strand at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.771 kb on + strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.988 kb on + strand at 157.988 kb on + strand at 157.988 kb on + strand at 157.989 kb on - strand at 157.989 kb on - strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.032 kb on + strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.129 kb on + strand at 158.307 kb on + strand, within ABZR87_RS00785 at 158.307 kb on + strand, within ABZR87_RS00785 at 158.373 kb on + strand, within ABZR87_RS00785 at 158.374 kb on - strand, within ABZR87_RS00785 at 158.463 kb on + strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.506 kb on - strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 156,281 + ABZR87_RS00775 0.37 -2.0 156,282 - ABZR87_RS00775 0.37 -0.9 156,282 - ABZR87_RS00775 0.37 -1.5 156,337 + ABZR87_RS00775 0.41 +1.0 156,350 + ABZR87_RS00775 0.43 +1.0 156,351 - ABZR87_RS00775 0.43 -1.2 156,390 + ABZR87_RS00775 0.46 -0.3 156,577 + ABZR87_RS00775 0.62 +0.3 156,578 - ABZR87_RS00775 0.62 -1.3 156,578 - ABZR87_RS00775 0.62 +1.0 156,607 + ABZR87_RS00775 0.65 +0.3 156,607 + ABZR87_RS00775 0.65 -0.4 156,608 - ABZR87_RS00775 0.65 -0.2 156,608 - ABZR87_RS00775 0.65 -1.9 156,608 - ABZR87_RS00775 0.65 -0.3 156,608 - ABZR87_RS00775 0.65 -0.6 156,673 + ABZR87_RS00775 0.71 -0.3 156,674 - ABZR87_RS00775 0.71 -0.8 156,674 - ABZR87_RS00775 0.71 -1.2 157,067 + -2.9 157,067 + -1.3 157,068 - -1.2 157,068 - +0.7 157,068 - -0.8 157,101 + +0.2 157,123 + +0.2 157,147 + -0.4 157,147 + -1.1 157,148 - -1.9 157,170 + +0.8 157,171 - -0.5 157,171 - +0.0 157,172 + -0.7 157,172 + -0.1 157,173 - +0.1 157,180 - -1.8 157,182 + -0.1 157,214 - +0.3 157,214 - +0.6 157,214 - +1.0 157,214 - +0.9 157,214 - +0.3 157,251 + -0.5 157,251 + +1.8 157,257 + -0.7 157,516 + ABZR87_RS00780 0.37 +0.2 157,516 + ABZR87_RS00780 0.37 +0.6 157,516 + ABZR87_RS00780 0.37 -1.1 157,516 + ABZR87_RS00780 0.37 +0.9 157,516 + ABZR87_RS00780 0.37 -0.2 157,517 - ABZR87_RS00780 0.37 +0.0 157,517 - ABZR87_RS00780 0.37 +1.0 157,517 - ABZR87_RS00780 0.37 +0.3 157,517 - ABZR87_RS00780 0.37 +1.0 157,517 - ABZR87_RS00780 0.37 -0.4 157,532 - ABZR87_RS00780 0.40 -0.3 157,532 - ABZR87_RS00780 0.40 +0.2 157,532 - ABZR87_RS00780 0.40 -0.5 157,771 + ABZR87_RS00780 0.76 -0.8 157,847 - ABZR87_RS00780 0.88 +1.4 157,847 - ABZR87_RS00780 0.88 +0.2 157,988 + -0.5 157,988 + +0.1 157,988 + -1.2 157,989 - -0.2 157,989 - -1.2 158,031 + +0.6 158,031 + +0.5 158,031 + -0.2 158,031 + +0.1 158,032 + -1.1 158,032 - +0.7 158,032 - -0.7 158,032 - +0.7 158,032 - +0.7 158,124 + +0.8 158,124 + +0.0 158,124 + +1.7 158,124 + -0.4 158,124 + -0.7 158,124 + +1.7 158,124 + +0.7 158,124 + -0.5 158,125 - +1.0 158,125 - -0.3 158,125 - -0.4 158,125 - +0.1 158,125 - +1.0 158,129 + -0.6 158,307 + ABZR87_RS00785 0.25 -0.5 158,307 + ABZR87_RS00785 0.25 +0.3 158,373 + ABZR87_RS00785 0.32 -0.2 158,374 - ABZR87_RS00785 0.32 -0.8 158,463 + ABZR87_RS00785 0.42 +1.2 158,464 - ABZR87_RS00785 0.42 -0.6 158,464 - ABZR87_RS00785 0.42 +1.0 158,464 - ABZR87_RS00785 0.42 -1.7 158,505 + ABZR87_RS00785 0.46 +0.0 158,505 + ABZR87_RS00785 0.46 -0.1 158,506 - ABZR87_RS00785 0.46 -0.7 158,802 + ABZR87_RS00785 0.77 -0.5 158,802 + ABZR87_RS00785 0.77 -1.1 158,803 - ABZR87_RS00785 0.77 -0.4 158,803 - ABZR87_RS00785 0.77 -1.8
Or see this region's nucleotide sequence