Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00295

Experiment: rhizosphere sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS00285 and ABZR87_RS00290 are separated by 79 nucleotidesABZR87_RS00290 and ABZR87_RS00295 are separated by 66 nucleotidesABZR87_RS00295 and ABZR87_RS00300 are separated by 16 nucleotidesABZR87_RS00300 and ABZR87_RS00305 are separated by 13 nucleotides ABZR87_RS00285: ABZR87_RS00285 - acetylornithine transaminase, at 58,396 to 59,583 _RS00285 ABZR87_RS00290: ABZR87_RS00290 - GNAT family N-acetyltransferase, at 59,663 to 60,139 _RS00290 ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922 _RS00295 ABZR87_RS00300: ABZR87_RS00300 - ABC transporter ATP-binding protein, at 60,939 to 61,715 _RS00300 ABZR87_RS00305: ABZR87_RS00305 - ABC transporter ATP-binding protein, at 61,729 to 62,856 _RS00305 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 59.224 kb on + strand, within ABZR87_RS00285at 59.224 kb on + strand, within ABZR87_RS00285at 59.224 kb on + strand, within ABZR87_RS00285at 59.320 kb on + strand, within ABZR87_RS00285at 59.320 kb on + strand, within ABZR87_RS00285at 59.596 kb on + strandat 59.596 kb on + strandat 59.596 kb on + strandat 59.597 kb on - strandat 59.597 kb on - strandat 59.597 kb on - strandat 59.597 kb on - strandat 59.597 kb on - strandat 59.597 kb on - strandat 59.736 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.737 kb on + strand, within ABZR87_RS00290at 59.738 kb on - strand, within ABZR87_RS00290at 59.738 kb on - strand, within ABZR87_RS00290at 59.738 kb on - strand, within ABZR87_RS00290at 59.738 kb on - strand, within ABZR87_RS00290at 59.738 kb on - strand, within ABZR87_RS00290at 59.738 kb on - strand, within ABZR87_RS00290at 59.741 kb on + strand, within ABZR87_RS00290at 59.741 kb on + strand, within ABZR87_RS00290at 59.741 kb on + strand, within ABZR87_RS00290at 59.741 kb on + strand, within ABZR87_RS00290at 59.742 kb on - strand, within ABZR87_RS00290at 59.742 kb on - strand, within ABZR87_RS00290at 59.742 kb on - strand, within ABZR87_RS00290at 59.765 kb on + strand, within ABZR87_RS00290at 59.765 kb on + strand, within ABZR87_RS00290at 59.835 kb on - strand, within ABZR87_RS00290at 59.913 kb on - strand, within ABZR87_RS00290at 59.913 kb on - strand, within ABZR87_RS00290at 60.017 kb on - strand, within ABZR87_RS00290at 60.017 kb on - strand, within ABZR87_RS00290at 60.050 kb on + strand, within ABZR87_RS00290at 60.050 kb on + strand, within ABZR87_RS00290at 60.051 kb on - strand, within ABZR87_RS00290at 60.119 kb on + strandat 60.119 kb on + strandat 60.119 kb on + strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.208 kb on - strandat 60.208 kb on - strandat 60.208 kb on - strandat 60.208 kb on - strandat 60.219 kb on + strandat 60.219 kb on + strandat 60.220 kb on - strandat 60.220 kb on - strandat 60.220 kb on - strandat 60.297 kb on + strand, within ABZR87_RS00295at 60.699 kb on + strand, within ABZR87_RS00295at 60.699 kb on + strand, within ABZR87_RS00295at 60.700 kb on - strand, within ABZR87_RS00295at 60.700 kb on - strand, within ABZR87_RS00295at 60.732 kb on + strand, within ABZR87_RS00295at 60.733 kb on - strand, within ABZR87_RS00295at 60.879 kb on + strandat 60.911 kb on + strandat 60.912 kb on - strandat 60.922 kb on + strandat 60.922 kb on + strandat 60.922 kb on + strandat 60.923 kb on - strandat 60.961 kb on + strandat 61.244 kb on - strand, within ABZR87_RS00300at 61.244 kb on - strand, within ABZR87_RS00300at 61.244 kb on - strand, within ABZR87_RS00300at 61.264 kb on + strand, within ABZR87_RS00300at 61.264 kb on + strand, within ABZR87_RS00300at 61.265 kb on - strand, within ABZR87_RS00300at 61.273 kb on + strand, within ABZR87_RS00300at 61.273 kb on + strand, within ABZR87_RS00300at 61.274 kb on - strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.292 kb on - strand, within ABZR87_RS00300at 61.504 kb on + strand, within ABZR87_RS00300at 61.505 kb on - strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.610 kb on - strand, within ABZR87_RS00300at 61.734 kb on + strandat 61.735 kb on - strandat 61.812 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
remove
59,224 + ABZR87_RS00285 0.70 +4.2
59,224 + ABZR87_RS00285 0.70 +1.8
59,224 + ABZR87_RS00285 0.70 +3.2
59,320 + ABZR87_RS00285 0.78 +2.6
59,320 + ABZR87_RS00285 0.78 +1.8
59,596 + -0.6
59,596 + +0.8
59,596 + -0.0
59,597 - +0.6
59,597 - +1.5
59,597 - +1.0
59,597 - -0.8
59,597 - -0.4
59,597 - -0.9
59,736 + ABZR87_RS00290 0.15 -0.7
59,737 + ABZR87_RS00290 0.16 -0.6
59,737 + ABZR87_RS00290 0.16 -0.0
59,737 + ABZR87_RS00290 0.16 +0.9
59,737 + ABZR87_RS00290 0.16 +0.7
59,737 + ABZR87_RS00290 0.16 -1.1
59,737 + ABZR87_RS00290 0.16 +1.6
59,737 + ABZR87_RS00290 0.16 -0.0
59,738 - ABZR87_RS00290 0.16 +1.2
59,738 - ABZR87_RS00290 0.16 -1.5
59,738 - ABZR87_RS00290 0.16 -0.5
59,738 - ABZR87_RS00290 0.16 +0.1
59,738 - ABZR87_RS00290 0.16 -1.3
59,738 - ABZR87_RS00290 0.16 -0.1
59,741 + ABZR87_RS00290 0.16 +0.8
59,741 + ABZR87_RS00290 0.16 +0.9
59,741 + ABZR87_RS00290 0.16 -0.3
59,741 + ABZR87_RS00290 0.16 -0.8
59,742 - ABZR87_RS00290 0.17 +1.3
59,742 - ABZR87_RS00290 0.17 -0.9
59,742 - ABZR87_RS00290 0.17 -0.4
59,765 + ABZR87_RS00290 0.21 +0.0
59,765 + ABZR87_RS00290 0.21 -1.2
59,835 - ABZR87_RS00290 0.36 +0.3
59,913 - ABZR87_RS00290 0.52 -0.3
59,913 - ABZR87_RS00290 0.52 -2.6
60,017 - ABZR87_RS00290 0.74 +0.9
60,017 - ABZR87_RS00290 0.74 +0.9
60,050 + ABZR87_RS00290 0.81 -0.2
60,050 + ABZR87_RS00290 0.81 -0.0
60,051 - ABZR87_RS00290 0.81 +2.2
60,119 + -0.2
60,119 + -1.3
60,119 + +1.0
60,120 - -1.9
60,120 - +0.2
60,120 - -0.4
60,120 - -0.4
60,120 - +0.7
60,120 - -1.3
60,208 - +1.5
60,208 - -0.2
60,208 - +0.4
60,208 - +0.1
60,219 + -0.5
60,219 + -1.4
60,220 - -1.3
60,220 - +2.0
60,220 - -0.7
60,297 + ABZR87_RS00295 0.13 +0.8
60,699 + ABZR87_RS00295 0.69 -0.6
60,699 + ABZR87_RS00295 0.69 +0.2
60,700 - ABZR87_RS00295 0.69 -0.5
60,700 - ABZR87_RS00295 0.69 -0.1
60,732 + ABZR87_RS00295 0.73 +0.1
60,733 - ABZR87_RS00295 0.74 -1.0
60,879 + -1.0
60,911 + -1.8
60,912 - -1.1
60,922 + -1.3
60,922 + -0.2
60,922 + -0.3
60,923 - -1.5
60,961 + +0.3
61,244 - ABZR87_RS00300 0.39 -1.2
61,244 - ABZR87_RS00300 0.39 -0.8
61,244 - ABZR87_RS00300 0.39 +0.5
61,264 + ABZR87_RS00300 0.42 +0.4
61,264 + ABZR87_RS00300 0.42 -1.5
61,265 - ABZR87_RS00300 0.42 +1.2
61,273 + ABZR87_RS00300 0.43 -0.0
61,273 + ABZR87_RS00300 0.43 +1.6
61,274 - ABZR87_RS00300 0.43 +0.2
61,291 + ABZR87_RS00300 0.45 +0.7
61,291 + ABZR87_RS00300 0.45 -0.1
61,291 + ABZR87_RS00300 0.45 -2.5
61,292 - ABZR87_RS00300 0.45 -2.0
61,504 + ABZR87_RS00300 0.73 -0.6
61,505 - ABZR87_RS00300 0.73 -0.2
61,546 + ABZR87_RS00300 0.78 -0.4
61,546 + ABZR87_RS00300 0.78 -0.7
61,546 + ABZR87_RS00300 0.78 -0.2
61,547 - ABZR87_RS00300 0.78 -1.6
61,547 - ABZR87_RS00300 0.78 -0.2
61,547 - ABZR87_RS00300 0.78 +0.3
61,547 - ABZR87_RS00300 0.78 +0.6
61,547 - ABZR87_RS00300 0.78 -1.3
61,547 - ABZR87_RS00300 0.78 -1.2
61,547 - ABZR87_RS00300 0.78 +0.5
61,547 - ABZR87_RS00300 0.78 +0.4
61,610 - ABZR87_RS00300 0.86 -1.5
61,734 + -2.2
61,735 - -0.2
61,812 - +0.2

Or see this region's nucleotide sequence