Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3129

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3127 and Rru_A3128 are separated by 108 nucleotidesRru_A3128 and Rru_A3129 overlap by 4 nucleotidesRru_A3129 and Rru_A3130 overlap by 4 nucleotidesRru_A3130 and Rru_A3131 overlap by 4 nucleotides Rru_A3127: Rru_A3127 - Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI), at 3,606,306 to 3,606,941 _A3127 Rru_A3128: Rru_A3128 - Transcriptional Regulator, AraC family (NCBI), at 3,607,050 to 3,607,835 _A3128 Rru_A3129: Rru_A3129 - ABC-2 transporter component (NCBI), at 3,607,832 to 3,608,968 _A3129 Rru_A3130: Rru_A3130 - ABC transporter component (NCBI), at 3,608,965 to 3,609,915 _A3130 Rru_A3131: Rru_A3131 - Secretion protein HlyD (NCBI), at 3,609,912 to 3,610,946 _A3131 Position (kb) 3607 3608 3609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3606.880 kb on + strandat 3606.881 kb on - strandat 3606.881 kb on - strandat 3606.903 kb on - strandat 3607.014 kb on + strandat 3607.019 kb on + strandat 3607.019 kb on + strandat 3607.020 kb on - strandat 3607.314 kb on + strand, within Rru_A3128at 3607.314 kb on + strand, within Rru_A3128at 3607.315 kb on - strand, within Rru_A3128at 3607.315 kb on - strand, within Rru_A3128at 3607.315 kb on - strand, within Rru_A3128at 3607.315 kb on - strand, within Rru_A3128at 3607.480 kb on + strand, within Rru_A3128at 3607.481 kb on - strand, within Rru_A3128at 3607.481 kb on - strand, within Rru_A3128at 3607.755 kb on + strand, within Rru_A3128at 3607.833 kb on + strandat 3607.833 kb on + strandat 3607.834 kb on - strandat 3607.834 kb on - strandat 3607.940 kb on + strandat 3608.225 kb on + strand, within Rru_A3129at 3608.225 kb on + strand, within Rru_A3129at 3608.226 kb on - strand, within Rru_A3129at 3608.236 kb on + strand, within Rru_A3129at 3608.245 kb on + strand, within Rru_A3129at 3608.247 kb on + strand, within Rru_A3129at 3608.248 kb on - strand, within Rru_A3129at 3608.248 kb on - strand, within Rru_A3129at 3608.248 kb on - strand, within Rru_A3129at 3608.248 kb on - strand, within Rru_A3129at 3608.248 kb on - strand, within Rru_A3129at 3608.262 kb on + strand, within Rru_A3129at 3608.421 kb on + strand, within Rru_A3129at 3608.421 kb on + strand, within Rru_A3129at 3608.421 kb on + strand, within Rru_A3129at 3608.421 kb on + strand, within Rru_A3129at 3608.421 kb on + strand, within Rru_A3129at 3608.422 kb on - strand, within Rru_A3129at 3608.422 kb on - strand, within Rru_A3129at 3608.422 kb on - strand, within Rru_A3129at 3608.422 kb on - strand, within Rru_A3129at 3609.260 kb on + strand, within Rru_A3130at 3609.269 kb on + strand, within Rru_A3130at 3609.269 kb on + strand, within Rru_A3130at 3609.270 kb on - strand, within Rru_A3130at 3609.270 kb on - strand, within Rru_A3130at 3609.270 kb on - strand, within Rru_A3130at 3609.272 kb on + strand, within Rru_A3130at 3609.272 kb on + strand, within Rru_A3130at 3609.273 kb on - strand, within Rru_A3130at 3609.305 kb on + strand, within Rru_A3130at 3609.305 kb on + strand, within Rru_A3130at 3609.306 kb on - strand, within Rru_A3130at 3609.306 kb on - strand, within Rru_A3130at 3609.354 kb on + strand, within Rru_A3130at 3609.354 kb on + strand, within Rru_A3130at 3609.355 kb on - strand, within Rru_A3130at 3609.355 kb on - strand, within Rru_A3130at 3609.355 kb on - strand, within Rru_A3130at 3609.636 kb on + strand, within Rru_A3130at 3609.636 kb on + strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.637 kb on - strand, within Rru_A3130at 3609.638 kb on + strand, within Rru_A3130at 3609.639 kb on - strand, within Rru_A3130

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,606,880 + +0.0
3,606,881 - +0.2
3,606,881 - -0.2
3,606,903 - +1.1
3,607,014 + -0.1
3,607,019 + +0.6
3,607,019 + -0.5
3,607,020 - -0.0
3,607,314 + Rru_A3128 0.34 +1.9
3,607,314 + Rru_A3128 0.34 +0.3
3,607,315 - Rru_A3128 0.34 -3.9
3,607,315 - Rru_A3128 0.34 -0.5
3,607,315 - Rru_A3128 0.34 -0.8
3,607,315 - Rru_A3128 0.34 +0.4
3,607,480 + Rru_A3128 0.55 +0.3
3,607,481 - Rru_A3128 0.55 +0.9
3,607,481 - Rru_A3128 0.55 +0.4
3,607,755 + Rru_A3128 0.90 +0.3
3,607,833 + -0.7
3,607,833 + +0.0
3,607,834 - -0.1
3,607,834 - +0.9
3,607,940 + +0.0
3,608,225 + Rru_A3129 0.35 -2.1
3,608,225 + Rru_A3129 0.35 +0.5
3,608,226 - Rru_A3129 0.35 -1.0
3,608,236 + Rru_A3129 0.36 -0.7
3,608,245 + Rru_A3129 0.36 -0.4
3,608,247 + Rru_A3129 0.36 +0.3
3,608,248 - Rru_A3129 0.37 -0.0
3,608,248 - Rru_A3129 0.37 +1.3
3,608,248 - Rru_A3129 0.37 +0.3
3,608,248 - Rru_A3129 0.37 +0.4
3,608,248 - Rru_A3129 0.37 -0.9
3,608,262 + Rru_A3129 0.38 -0.7
3,608,421 + Rru_A3129 0.52 +0.8
3,608,421 + Rru_A3129 0.52 -0.7
3,608,421 + Rru_A3129 0.52 +0.0
3,608,421 + Rru_A3129 0.52 -0.8
3,608,421 + Rru_A3129 0.52 +0.3
3,608,422 - Rru_A3129 0.52 -1.9
3,608,422 - Rru_A3129 0.52 -1.9
3,608,422 - Rru_A3129 0.52 -1.0
3,608,422 - Rru_A3129 0.52 -1.8
3,609,260 + Rru_A3130 0.31 -2.1
3,609,269 + Rru_A3130 0.32 +0.8
3,609,269 + Rru_A3130 0.32 +0.6
3,609,270 - Rru_A3130 0.32 +1.2
3,609,270 - Rru_A3130 0.32 -0.5
3,609,270 - Rru_A3130 0.32 -0.5
3,609,272 + Rru_A3130 0.32 -3.5
3,609,272 + Rru_A3130 0.32 +0.2
3,609,273 - Rru_A3130 0.32 -0.4
3,609,305 + Rru_A3130 0.36 +0.4
3,609,305 + Rru_A3130 0.36 -0.4
3,609,306 - Rru_A3130 0.36 -0.6
3,609,306 - Rru_A3130 0.36 -1.5
3,609,354 + Rru_A3130 0.41 -0.1
3,609,354 + Rru_A3130 0.41 -0.1
3,609,355 - Rru_A3130 0.41 +0.0
3,609,355 - Rru_A3130 0.41 -0.0
3,609,355 - Rru_A3130 0.41 +1.7
3,609,636 + Rru_A3130 0.71 -0.6
3,609,636 + Rru_A3130 0.71 -0.0
3,609,637 - Rru_A3130 0.71 +0.1
3,609,637 - Rru_A3130 0.71 +0.1
3,609,637 - Rru_A3130 0.71 +0.6
3,609,637 - Rru_A3130 0.71 +0.2
3,609,637 - Rru_A3130 0.71 -0.4
3,609,637 - Rru_A3130 0.71 +0.2
3,609,637 - Rru_A3130 0.71 -0.5
3,609,637 - Rru_A3130 0.71 +0.6
3,609,638 + Rru_A3130 0.71 +0.9
3,609,639 - Rru_A3130 0.71 -0.0

Or see this region's nucleotide sequence