Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2845 and Rru_A2846 are separated by 154 nucleotides Rru_A2846 and Rru_A2847 are separated by 100 nucleotides Rru_A2847 and Rru_A2848 are separated by 190 nucleotides
Rru_A2845: Rru_A2845 - Flagellar L-ring protein (NCBI), at 3,276,308 to 3,277,075
_A2845
Rru_A2846: Rru_A2846 - hypothetical protein (NCBI), at 3,277,230 to 3,277,586
_A2846
Rru_A2847: Rru_A2847 - Transcriptional regulators, TraR/DksA family (NCBI), at 3,277,687 to 3,278,103
_A2847
Rru_A2848: Rru_A2848 - hypothetical protein (NCBI), at 3,278,294 to 3,278,740
_A2848
Position (kb)
3277
3278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3276.235 kb on - strand at 3276.255 kb on - strand at 3276.635 kb on - strand, within Rru_A2845 at 3276.658 kb on + strand, within Rru_A2845 at 3276.659 kb on - strand, within Rru_A2845 at 3276.773 kb on - strand, within Rru_A2845 at 3276.773 kb on - strand, within Rru_A2845 at 3277.052 kb on + strand at 3277.052 kb on + strand at 3277.053 kb on - strand at 3277.073 kb on + strand at 3277.073 kb on + strand at 3277.074 kb on - strand at 3277.129 kb on + strand at 3277.130 kb on - strand at 3277.214 kb on - strand at 3277.403 kb on - strand, within Rru_A2846 at 3277.415 kb on + strand, within Rru_A2846 at 3277.464 kb on + strand, within Rru_A2846 at 3277.464 kb on + strand, within Rru_A2846 at 3277.584 kb on + strand at 3277.584 kb on + strand at 3277.584 kb on + strand at 3277.584 kb on + strand at 3277.585 kb on - strand at 3277.688 kb on + strand at 3277.689 kb on - strand at 3277.689 kb on - strand at 3277.814 kb on + strand, within Rru_A2847 at 3277.814 kb on + strand, within Rru_A2847 at 3278.079 kb on - strand at 3278.186 kb on + strand at 3278.189 kb on - strand at 3278.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,276,235 - -0.2 3,276,255 - -0.9 3,276,635 - Rru_A2845 0.43 -0.3 3,276,658 + Rru_A2845 0.46 -0.4 3,276,659 - Rru_A2845 0.46 +2.3 3,276,773 - Rru_A2845 0.61 +1.1 3,276,773 - Rru_A2845 0.61 -0.1 3,277,052 + -0.2 3,277,052 + -1.2 3,277,053 - -0.7 3,277,073 + -0.6 3,277,073 + -0.9 3,277,074 - +0.6 3,277,129 + -1.1 3,277,130 - +0.5 3,277,214 - -1.8 3,277,403 - Rru_A2846 0.48 -0.9 3,277,415 + Rru_A2846 0.52 -2.4 3,277,464 + Rru_A2846 0.66 +3.3 3,277,464 + Rru_A2846 0.66 -1.5 3,277,584 + -2.9 3,277,584 + +0.7 3,277,584 + -0.9 3,277,584 + -2.7 3,277,585 - +0.9 3,277,688 + -0.6 3,277,689 - +0.2 3,277,689 - +0.9 3,277,814 + Rru_A2847 0.30 -1.6 3,277,814 + Rru_A2847 0.30 -3.4 3,278,079 - -2.9 3,278,186 + -1.1 3,278,189 - +1.5 3,278,220 - +0.1
Or see this region's nucleotide sequence