Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2729

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2727 and Rru_A2728 are separated by 122 nucleotidesRru_A2728 and Rru_A2729 are separated by 182 nucleotidesRru_A2729 and Rru_A2730 are separated by 51 nucleotidesRru_A2730 and Rru_A2731 are separated by 284 nucleotides Rru_A2727: Rru_A2727 - hypothetical protein (NCBI), at 3,155,047 to 3,155,838 _A2727 Rru_A2728: Rru_A2728 - NnrU (NCBI), at 3,155,961 to 3,156,641 _A2728 Rru_A2729: Rru_A2729 - hypothetical protein (NCBI), at 3,156,824 to 3,157,387 _A2729 Rru_A2730: Rru_A2730 - hypothetical protein (NCBI), at 3,157,439 to 3,157,753 _A2730 Rru_A2731: Rru_A2731 - Exopolysaccharide synthesis, ExoD (NCBI), at 3,158,038 to 3,158,682 _A2731 Position (kb) 3156 3157 3158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3155.921 kb on - strandat 3155.933 kb on + strandat 3155.933 kb on + strandat 3155.933 kb on + strandat 3155.934 kb on - strandat 3155.957 kb on + strandat 3155.957 kb on + strandat 3155.957 kb on + strandat 3155.958 kb on - strandat 3155.958 kb on - strandat 3155.958 kb on - strandat 3155.958 kb on - strandat 3156.025 kb on + strandat 3156.025 kb on + strandat 3156.026 kb on - strandat 3156.127 kb on + strand, within Rru_A2728at 3156.128 kb on - strand, within Rru_A2728at 3156.196 kb on + strand, within Rru_A2728at 3156.196 kb on + strand, within Rru_A2728at 3156.196 kb on + strand, within Rru_A2728at 3156.197 kb on - strand, within Rru_A2728at 3156.290 kb on + strand, within Rru_A2728at 3156.290 kb on + strand, within Rru_A2728at 3156.290 kb on + strand, within Rru_A2728at 3156.369 kb on + strand, within Rru_A2728at 3156.500 kb on + strand, within Rru_A2728at 3156.500 kb on + strand, within Rru_A2728at 3156.500 kb on + strand, within Rru_A2728at 3156.501 kb on - strand, within Rru_A2728at 3156.501 kb on - strand, within Rru_A2728at 3156.502 kb on + strand, within Rru_A2728at 3156.503 kb on - strand, within Rru_A2728at 3156.717 kb on + strandat 3156.722 kb on + strandat 3156.722 kb on + strandat 3156.723 kb on - strandat 3157.010 kb on - strand, within Rru_A2729at 3157.354 kb on + strandat 3157.413 kb on + strandat 3157.472 kb on + strand, within Rru_A2730at 3157.473 kb on + strand, within Rru_A2730at 3157.473 kb on + strand, within Rru_A2730at 3157.474 kb on - strand, within Rru_A2730at 3157.474 kb on - strand, within Rru_A2730at 3157.474 kb on - strand, within Rru_A2730at 3157.474 kb on - strand, within Rru_A2730at 3157.474 kb on - strand, within Rru_A2730at 3157.479 kb on + strand, within Rru_A2730at 3157.480 kb on - strand, within Rru_A2730at 3157.480 kb on - strand, within Rru_A2730at 3157.480 kb on - strand, within Rru_A2730at 3157.480 kb on - strand, within Rru_A2730at 3157.554 kb on + strand, within Rru_A2730at 3157.554 kb on + strand, within Rru_A2730at 3157.554 kb on + strand, within Rru_A2730at 3157.554 kb on + strand, within Rru_A2730at 3157.554 kb on + strand, within Rru_A2730at 3157.599 kb on + strand, within Rru_A2730at 3157.599 kb on + strand, within Rru_A2730at 3157.600 kb on - strand, within Rru_A2730at 3157.600 kb on - strand, within Rru_A2730at 3157.600 kb on - strand, within Rru_A2730at 3157.683 kb on + strand, within Rru_A2730at 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.724 kb on + strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.725 kb on - strandat 3157.728 kb on + strandat 3157.728 kb on + strandat 3157.728 kb on + strandat 3157.728 kb on + strandat 3157.728 kb on + strandat 3157.729 kb on - strandat 3157.729 kb on - strandat 3157.729 kb on - strandat 3157.729 kb on - strandat 3157.789 kb on + strandat 3157.789 kb on + strandat 3157.789 kb on + strandat 3157.789 kb on + strandat 3157.789 kb on + strandat 3157.790 kb on - strandat 3157.790 kb on - strandat 3157.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,155,921 - -0.3
3,155,933 + -1.9
3,155,933 + -1.2
3,155,933 + -0.6
3,155,934 - +0.3
3,155,957 + -0.2
3,155,957 + -0.6
3,155,957 + +1.9
3,155,958 - -0.9
3,155,958 - -1.6
3,155,958 - +0.0
3,155,958 - -2.1
3,156,025 + +0.3
3,156,025 + -0.4
3,156,026 - -0.9
3,156,127 + Rru_A2728 0.24 +1.2
3,156,128 - Rru_A2728 0.25 -2.8
3,156,196 + Rru_A2728 0.35 +0.4
3,156,196 + Rru_A2728 0.35 +1.3
3,156,196 + Rru_A2728 0.35 +0.1
3,156,197 - Rru_A2728 0.35 -2.9
3,156,290 + Rru_A2728 0.48 +0.2
3,156,290 + Rru_A2728 0.48 -1.3
3,156,290 + Rru_A2728 0.48 +0.0
3,156,369 + Rru_A2728 0.60 -0.1
3,156,500 + Rru_A2728 0.79 +0.3
3,156,500 + Rru_A2728 0.79 -0.2
3,156,500 + Rru_A2728 0.79 +0.5
3,156,501 - Rru_A2728 0.79 +0.8
3,156,501 - Rru_A2728 0.79 +0.6
3,156,502 + Rru_A2728 0.79 -0.2
3,156,503 - Rru_A2728 0.80 -0.1
3,156,717 + -2.9
3,156,722 + +0.2
3,156,722 + -0.4
3,156,723 - +1.7
3,157,010 - Rru_A2729 0.33 +0.7
3,157,354 + -0.4
3,157,413 + -1.2
3,157,472 + Rru_A2730 0.10 -0.5
3,157,473 + Rru_A2730 0.11 +1.3
3,157,473 + Rru_A2730 0.11 +0.2
3,157,474 - Rru_A2730 0.11 +1.4
3,157,474 - Rru_A2730 0.11 -0.7
3,157,474 - Rru_A2730 0.11 +0.3
3,157,474 - Rru_A2730 0.11 -0.7
3,157,474 - Rru_A2730 0.11 -1.3
3,157,479 + Rru_A2730 0.13 +0.1
3,157,480 - Rru_A2730 0.13 +0.5
3,157,480 - Rru_A2730 0.13 -4.5
3,157,480 - Rru_A2730 0.13 +0.9
3,157,480 - Rru_A2730 0.13 +0.7
3,157,554 + Rru_A2730 0.37 -0.5
3,157,554 + Rru_A2730 0.37 +0.9
3,157,554 + Rru_A2730 0.37 -3.4
3,157,554 + Rru_A2730 0.37 +1.9
3,157,554 + Rru_A2730 0.37 +0.5
3,157,599 + Rru_A2730 0.51 -0.2
3,157,599 + Rru_A2730 0.51 -0.7
3,157,600 - Rru_A2730 0.51 +0.0
3,157,600 - Rru_A2730 0.51 +0.1
3,157,600 - Rru_A2730 0.51 +0.2
3,157,683 + Rru_A2730 0.77 +0.8
3,157,724 + -3.4
3,157,724 + -1.6
3,157,724 + -0.2
3,157,724 + +0.5
3,157,724 + -0.7
3,157,724 + +0.4
3,157,724 + -0.1
3,157,724 + +0.5
3,157,725 - +0.1
3,157,725 - +0.3
3,157,725 - -0.1
3,157,725 - -0.7
3,157,725 - -2.8
3,157,725 - -2.6
3,157,725 - -0.5
3,157,725 - -2.3
3,157,725 - +0.2
3,157,725 - -0.1
3,157,725 - +0.6
3,157,725 - -0.5
3,157,725 - +1.2
3,157,725 - -0.1
3,157,728 + +0.6
3,157,728 + -0.4
3,157,728 + +0.2
3,157,728 + -0.9
3,157,728 + +0.5
3,157,729 - +0.6
3,157,729 - -0.6
3,157,729 - -0.5
3,157,729 - -3.7
3,157,789 + -1.0
3,157,789 + -0.3
3,157,789 + -0.4
3,157,789 + -1.7
3,157,789 + +0.8
3,157,790 - +0.8
3,157,790 - +0.1
3,157,790 - +0.2

Or see this region's nucleotide sequence