Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2589 and Rru_A2590 are separated by 5 nucleotides Rru_A2590 and Rru_A2591 are separated by 43 nucleotides
Rru_A2589: Rru_A2589 - hypothetical protein (NCBI), at 3,008,584 to 3,009,942
_A2589
Rru_A2590: Rru_A2590 - hypothetical protein (NCBI), at 3,009,948 to 3,011,465
_A2590
Rru_A2591: Rru_A2591 - hypothetical protein (NCBI), at 3,011,509 to 3,012,225
_A2591
Position (kb)
3009
3010
3011
3012 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3009.014 kb on + strand, within Rru_A2589 at 3009.014 kb on + strand, within Rru_A2589 at 3009.014 kb on + strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.017 kb on + strand, within Rru_A2589 at 3009.018 kb on - strand, within Rru_A2589 at 3009.494 kb on + strand, within Rru_A2589 at 3009.576 kb on + strand, within Rru_A2589 at 3009.762 kb on - strand, within Rru_A2589 at 3009.878 kb on + strand at 3009.879 kb on - strand at 3009.879 kb on - strand at 3009.879 kb on - strand at 3009.949 kb on + strand at 3009.950 kb on - strand at 3010.096 kb on + strand at 3010.414 kb on + strand, within Rru_A2590 at 3010.414 kb on + strand, within Rru_A2590 at 3010.414 kb on + strand, within Rru_A2590 at 3010.414 kb on + strand, within Rru_A2590 at 3010.415 kb on - strand, within Rru_A2590 at 3010.415 kb on - strand, within Rru_A2590 at 3010.415 kb on - strand, within Rru_A2590 at 3010.415 kb on - strand, within Rru_A2590 at 3010.720 kb on + strand, within Rru_A2590 at 3010.721 kb on - strand, within Rru_A2590 at 3011.269 kb on + strand, within Rru_A2590 at 3011.431 kb on + strand at 3011.432 kb on - strand at 3011.432 kb on - strand at 3011.473 kb on + strand at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.734 kb on - strand, within Rru_A2591 at 3011.734 kb on - strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.972 kb on + strand, within Rru_A2591 at 3011.972 kb on + strand, within Rru_A2591 at 3011.973 kb on - strand, within Rru_A2591 at 3011.973 kb on - strand, within Rru_A2591
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,009,014 + Rru_A2589 0.32 +0.5 3,009,014 + Rru_A2589 0.32 +1.2 3,009,014 + Rru_A2589 0.32 +0.1 3,009,015 - Rru_A2589 0.32 +1.0 3,009,015 - Rru_A2589 0.32 -0.8 3,009,015 - Rru_A2589 0.32 -0.0 3,009,017 + Rru_A2589 0.32 -3.7 3,009,018 - Rru_A2589 0.32 +0.2 3,009,494 + Rru_A2589 0.67 -0.3 3,009,576 + Rru_A2589 0.73 -0.0 3,009,762 - Rru_A2589 0.87 -0.4 3,009,878 + -0.1 3,009,879 - +0.1 3,009,879 - +0.7 3,009,879 - +0.0 3,009,949 + -1.2 3,009,950 - +0.5 3,010,096 + -0.9 3,010,414 + Rru_A2590 0.31 -3.5 3,010,414 + Rru_A2590 0.31 +0.5 3,010,414 + Rru_A2590 0.31 -0.4 3,010,414 + Rru_A2590 0.31 -0.5 3,010,415 - Rru_A2590 0.31 -0.8 3,010,415 - Rru_A2590 0.31 -1.8 3,010,415 - Rru_A2590 0.31 -1.8 3,010,415 - Rru_A2590 0.31 -0.2 3,010,720 + Rru_A2590 0.51 -0.2 3,010,721 - Rru_A2590 0.51 -1.7 3,011,269 + Rru_A2590 0.87 +0.1 3,011,431 + +0.1 3,011,432 - -0.5 3,011,432 - +0.6 3,011,473 + -0.4 3,011,733 + Rru_A2591 0.31 +0.2 3,011,733 + Rru_A2591 0.31 +0.0 3,011,733 + Rru_A2591 0.31 -0.2 3,011,733 + Rru_A2591 0.31 +0.4 3,011,734 - Rru_A2591 0.31 -0.1 3,011,734 - Rru_A2591 0.31 -0.0 3,011,810 + Rru_A2591 0.42 +0.3 3,011,810 + Rru_A2591 0.42 -2.2 3,011,810 + Rru_A2591 0.42 -0.5 3,011,811 - Rru_A2591 0.42 -2.0 3,011,811 - Rru_A2591 0.42 +0.3 3,011,811 - Rru_A2591 0.42 -0.8 3,011,811 - Rru_A2591 0.42 +2.7 3,011,811 - Rru_A2591 0.42 +0.0 3,011,811 - Rru_A2591 0.42 +0.2 3,011,811 - Rru_A2591 0.42 -0.7 3,011,811 - Rru_A2591 0.42 +0.7 3,011,972 + Rru_A2591 0.65 -0.1 3,011,972 + Rru_A2591 0.65 +0.7 3,011,973 - Rru_A2591 0.65 +0.3 3,011,973 - Rru_A2591 0.65 -0.3
Or see this region's nucleotide sequence