Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2505 and Rru_A2506 overlap by 4 nucleotides Rru_A2506 and Rru_A2507 are separated by 218 nucleotides
Rru_A2505: Rru_A2505 - Response regulator receiver domain protein (CheY) (NCBI), at 2,911,919 to 2,912,869
_A2505
Rru_A2506: Rru_A2506 - Enoyl-CoA hydratase/isomerase (NCBI), at 2,912,866 to 2,913,648
_A2506
Rru_A2507: Rru_A2507 - Orotate phosphoribosyl transferase (NCBI), at 2,913,867 to 2,914,550
_A2507
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2911.868 kb on + strand at 2911.868 kb on + strand at 2911.878 kb on + strand at 2911.878 kb on + strand at 2911.879 kb on - strand at 2911.962 kb on + strand at 2911.966 kb on + strand at 2911.966 kb on + strand at 2911.966 kb on + strand at 2911.967 kb on - strand at 2912.111 kb on + strand, within Rru_A2505 at 2912.111 kb on + strand, within Rru_A2505 at 2912.111 kb on + strand, within Rru_A2505 at 2912.112 kb on - strand, within Rru_A2505 at 2912.112 kb on - strand, within Rru_A2505 at 2912.112 kb on - strand, within Rru_A2505 at 2912.558 kb on + strand, within Rru_A2505 at 2912.558 kb on + strand, within Rru_A2505 at 2912.558 kb on + strand, within Rru_A2505 at 2912.559 kb on - strand, within Rru_A2505 at 2912.559 kb on - strand, within Rru_A2505 at 2912.559 kb on - strand, within Rru_A2505 at 2912.559 kb on - strand, within Rru_A2505 at 2912.559 kb on - strand, within Rru_A2505 at 2912.559 kb on - strand, within Rru_A2505 at 2912.710 kb on + strand, within Rru_A2505 at 2912.710 kb on + strand, within Rru_A2505 at 2912.710 kb on + strand, within Rru_A2505 at 2912.711 kb on - strand, within Rru_A2505 at 2912.860 kb on - strand at 2912.925 kb on - strand at 2913.196 kb on + strand, within Rru_A2506 at 2913.197 kb on - strand, within Rru_A2506 at 2913.401 kb on + strand, within Rru_A2506 at 2913.401 kb on + strand, within Rru_A2506 at 2913.402 kb on - strand, within Rru_A2506 at 2913.402 kb on - strand, within Rru_A2506 at 2913.402 kb on - strand, within Rru_A2506 at 2913.402 kb on - strand, within Rru_A2506 at 2913.402 kb on - strand, within Rru_A2506 at 2913.607 kb on - strand at 2913.773 kb on + strand at 2913.963 kb on + strand, within Rru_A2507 at 2913.963 kb on + strand, within Rru_A2507 at 2913.963 kb on + strand, within Rru_A2507 at 2913.964 kb on - strand, within Rru_A2507 at 2913.965 kb on + strand, within Rru_A2507 at 2913.965 kb on + strand, within Rru_A2507 at 2913.965 kb on + strand, within Rru_A2507 at 2913.965 kb on + strand, within Rru_A2507 at 2913.965 kb on + strand, within Rru_A2507 at 2913.965 kb on + strand, within Rru_A2507 at 2913.966 kb on - strand, within Rru_A2507 at 2913.966 kb on - strand, within Rru_A2507 at 2913.996 kb on + strand, within Rru_A2507 at 2913.997 kb on - strand, within Rru_A2507 at 2913.997 kb on - strand, within Rru_A2507 at 2913.997 kb on - strand, within Rru_A2507 at 2913.999 kb on - strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.176 kb on + strand, within Rru_A2507 at 2914.177 kb on - strand, within Rru_A2507 at 2914.177 kb on - strand, within Rru_A2507 at 2914.177 kb on - strand, within Rru_A2507 at 2914.177 kb on - strand, within Rru_A2507 at 2914.177 kb on - strand, within Rru_A2507 at 2914.356 kb on + strand, within Rru_A2507 at 2914.356 kb on + strand, within Rru_A2507 at 2914.356 kb on + strand, within Rru_A2507 at 2914.356 kb on + strand, within Rru_A2507 at 2914.357 kb on - strand, within Rru_A2507 at 2914.357 kb on - strand, within Rru_A2507 at 2914.357 kb on - strand, within Rru_A2507 at 2914.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,911,868 + +0.4 2,911,868 + -1.9 2,911,878 + -0.6 2,911,878 + +1.8 2,911,879 - -0.8 2,911,962 + +0.2 2,911,966 + -0.1 2,911,966 + +0.1 2,911,966 + -0.9 2,911,967 - +2.0 2,912,111 + Rru_A2505 0.20 -0.2 2,912,111 + Rru_A2505 0.20 -0.7 2,912,111 + Rru_A2505 0.20 -0.2 2,912,112 - Rru_A2505 0.20 +0.4 2,912,112 - Rru_A2505 0.20 -0.1 2,912,112 - Rru_A2505 0.20 -1.2 2,912,558 + Rru_A2505 0.67 -0.5 2,912,558 + Rru_A2505 0.67 +0.1 2,912,558 + Rru_A2505 0.67 +0.3 2,912,559 - Rru_A2505 0.67 -0.5 2,912,559 - Rru_A2505 0.67 +1.2 2,912,559 - Rru_A2505 0.67 -0.3 2,912,559 - Rru_A2505 0.67 -0.0 2,912,559 - Rru_A2505 0.67 -0.4 2,912,559 - Rru_A2505 0.67 -0.9 2,912,710 + Rru_A2505 0.83 +0.4 2,912,710 + Rru_A2505 0.83 +0.1 2,912,710 + Rru_A2505 0.83 -0.3 2,912,711 - Rru_A2505 0.83 -0.3 2,912,860 - +0.5 2,912,925 - +0.5 2,913,196 + Rru_A2506 0.42 -1.1 2,913,197 - Rru_A2506 0.42 -0.4 2,913,401 + Rru_A2506 0.68 -0.1 2,913,401 + Rru_A2506 0.68 +1.0 2,913,402 - Rru_A2506 0.68 +0.5 2,913,402 - Rru_A2506 0.68 -0.7 2,913,402 - Rru_A2506 0.68 -1.5 2,913,402 - Rru_A2506 0.68 -0.1 2,913,402 - Rru_A2506 0.68 -1.1 2,913,607 - +0.2 2,913,773 + +0.7 2,913,963 + Rru_A2507 0.14 +0.1 2,913,963 + Rru_A2507 0.14 +1.6 2,913,963 + Rru_A2507 0.14 +0.3 2,913,964 - Rru_A2507 0.14 +1.0 2,913,965 + Rru_A2507 0.14 -2.1 2,913,965 + Rru_A2507 0.14 -0.0 2,913,965 + Rru_A2507 0.14 -0.1 2,913,965 + Rru_A2507 0.14 -0.1 2,913,965 + Rru_A2507 0.14 -0.6 2,913,965 + Rru_A2507 0.14 +1.2 2,913,966 - Rru_A2507 0.14 +2.3 2,913,966 - Rru_A2507 0.14 +0.9 2,913,996 + Rru_A2507 0.19 -1.3 2,913,997 - Rru_A2507 0.19 +1.7 2,913,997 - Rru_A2507 0.19 +0.7 2,913,997 - Rru_A2507 0.19 -0.1 2,913,999 - Rru_A2507 0.19 +0.1 2,914,176 + Rru_A2507 0.45 +0.4 2,914,176 + Rru_A2507 0.45 +0.6 2,914,176 + Rru_A2507 0.45 -0.0 2,914,176 + Rru_A2507 0.45 +1.0 2,914,176 + Rru_A2507 0.45 +0.5 2,914,176 + Rru_A2507 0.45 -1.2 2,914,176 + Rru_A2507 0.45 -0.5 2,914,176 + Rru_A2507 0.45 +0.1 2,914,177 - Rru_A2507 0.45 +0.7 2,914,177 - Rru_A2507 0.45 -0.4 2,914,177 - Rru_A2507 0.45 +0.7 2,914,177 - Rru_A2507 0.45 -1.4 2,914,177 - Rru_A2507 0.45 +0.4 2,914,356 + Rru_A2507 0.71 +0.9 2,914,356 + Rru_A2507 0.71 -0.2 2,914,356 + Rru_A2507 0.71 -1.2 2,914,356 + Rru_A2507 0.71 +0.3 2,914,357 - Rru_A2507 0.72 +1.9 2,914,357 - Rru_A2507 0.72 -0.3 2,914,357 - Rru_A2507 0.72 +0.5 2,914,579 + -0.9
Or see this region's nucleotide sequence