Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2446

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2445 and Rru_A2446 are separated by 2 nucleotidesRru_A2446 and Rru_A2447 overlap by 4 nucleotidesRru_A2447 and Rru_A2448 overlap by 4 nucleotides Rru_A2445: Rru_A2445 - Protein of unknown function DUF140 (NCBI), at 2,844,353 to 2,845,522 _A2445 Rru_A2446: Rru_A2446 - ABC transporter component (NCBI), at 2,845,525 to 2,846,319 _A2446 Rru_A2447: Rru_A2447 - Mammalian cell entry related (NCBI), at 2,846,316 to 2,847,287 _A2447 Rru_A2448: Rru_A2448 - Protein of unknown function DUF330 (NCBI), at 2,847,284 to 2,847,889 _A2448 Position (kb) 2845 2846 2847Strain fitness (log2 ratio) -3 -2 -1 0 1at 2845.082 kb on + strand, within Rru_A2445at 2845.082 kb on + strand, within Rru_A2445at 2845.082 kb on + strand, within Rru_A2445at 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.520 kb on + strandat 2845.521 kb on - strandat 2845.521 kb on - strandat 2845.521 kb on - strandat 2845.521 kb on - strandat 2845.521 kb on - strandat 2845.747 kb on + strand, within Rru_A2446at 2845.747 kb on + strand, within Rru_A2446at 2846.091 kb on + strand, within Rru_A2446at 2846.091 kb on + strand, within Rru_A2446at 2846.092 kb on - strand, within Rru_A2446at 2846.092 kb on - strand, within Rru_A2446at 2846.324 kb on + strandat 2846.631 kb on + strand, within Rru_A2447at 2846.631 kb on + strand, within Rru_A2447at 2846.631 kb on + strand, within Rru_A2447at 2846.632 kb on - strand, within Rru_A2447at 2847.298 kb on + strandat 2847.299 kb on - strandat 2847.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,845,082 + Rru_A2445 0.62 -0.9
2,845,082 + Rru_A2445 0.62 -0.5
2,845,082 + Rru_A2445 0.62 -2.1
2,845,520 + +0.8
2,845,520 + -1.3
2,845,520 + -0.5
2,845,520 + +0.4
2,845,520 + -0.0
2,845,520 + +1.3
2,845,520 + -0.4
2,845,520 + +0.6
2,845,520 + +0.1
2,845,521 - +0.0
2,845,521 - +0.5
2,845,521 - +0.6
2,845,521 - -0.2
2,845,521 - -3.0
2,845,747 + Rru_A2446 0.28 +0.0
2,845,747 + Rru_A2446 0.28 -0.5
2,846,091 + Rru_A2446 0.71 -1.3
2,846,091 + Rru_A2446 0.71 -1.8
2,846,092 - Rru_A2446 0.71 -2.5
2,846,092 - Rru_A2446 0.71 -3.4
2,846,324 + +0.2
2,846,631 + Rru_A2447 0.32 -0.5
2,846,631 + Rru_A2447 0.32 -0.2
2,846,631 + Rru_A2447 0.32 -0.8
2,846,632 - Rru_A2447 0.33 -0.1
2,847,298 + +0.3
2,847,299 - +0.3
2,847,299 - +1.2

Or see this region's nucleotide sequence