Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2249

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2248 and Rru_A2249 are separated by 325 nucleotidesRru_A2249 and Rru_A2250 are separated by 246 nucleotides Rru_A2248: Rru_A2248 - hypothetical protein (NCBI), at 2,610,524 to 2,611,081 _A2248 Rru_A2249: Rru_A2249 - Threonine aldolase (NCBI), at 2,611,407 to 2,612,456 _A2249 Rru_A2250: Rru_A2250 - ABC transporter component (NCBI), at 2,612,703 to 2,613,479 _A2250 Position (kb) 2611 2612 2613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2610.574 kb on - strandat 2610.574 kb on - strandat 2610.672 kb on + strand, within Rru_A2248at 2610.673 kb on - strand, within Rru_A2248at 2610.673 kb on - strand, within Rru_A2248at 2610.673 kb on - strand, within Rru_A2248at 2610.673 kb on - strand, within Rru_A2248at 2610.912 kb on + strand, within Rru_A2248at 2610.932 kb on + strand, within Rru_A2248at 2610.932 kb on + strand, within Rru_A2248at 2610.932 kb on + strand, within Rru_A2248at 2610.933 kb on - strand, within Rru_A2248at 2610.933 kb on - strand, within Rru_A2248at 2610.936 kb on + strand, within Rru_A2248at 2610.937 kb on - strand, within Rru_A2248at 2610.990 kb on + strand, within Rru_A2248at 2610.991 kb on - strand, within Rru_A2248at 2610.991 kb on - strand, within Rru_A2248at 2610.991 kb on - strand, within Rru_A2248at 2611.132 kb on + strandat 2611.205 kb on + strandat 2611.206 kb on - strandat 2611.206 kb on - strandat 2611.370 kb on + strandat 2611.370 kb on + strandat 2611.370 kb on + strandat 2611.370 kb on + strandat 2611.370 kb on + strandat 2611.370 kb on + strandat 2611.370 kb on + strandat 2611.371 kb on - strandat 2611.523 kb on - strand, within Rru_A2249at 2611.523 kb on - strand, within Rru_A2249at 2611.523 kb on - strand, within Rru_A2249at 2611.629 kb on - strand, within Rru_A2249at 2611.940 kb on + strand, within Rru_A2249at 2611.940 kb on + strand, within Rru_A2249at 2611.941 kb on - strand, within Rru_A2249at 2611.941 kb on - strand, within Rru_A2249at 2612.002 kb on + strand, within Rru_A2249at 2612.002 kb on + strand, within Rru_A2249at 2612.221 kb on + strand, within Rru_A2249at 2612.222 kb on - strand, within Rru_A2249at 2612.222 kb on - strand, within Rru_A2249at 2612.222 kb on - strand, within Rru_A2249at 2612.222 kb on - strand, within Rru_A2249at 2612.366 kb on - strandat 2612.366 kb on - strandat 2612.558 kb on - strandat 2612.601 kb on + strandat 2612.602 kb on - strandat 2612.602 kb on - strandat 2612.679 kb on + strandat 2612.679 kb on + strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.680 kb on - strandat 2612.681 kb on + strandat 2612.681 kb on + strandat 2612.682 kb on - strandat 2612.682 kb on - strandat 2612.738 kb on + strandat 2612.739 kb on - strandat 2612.739 kb on - strandat 2612.777 kb on + strandat 2612.777 kb on + strandat 2612.778 kb on - strandat 2612.778 kb on - strandat 2612.778 kb on - strandat 2612.778 kb on - strandat 2613.358 kb on + strand, within Rru_A2250at 2613.358 kb on + strand, within Rru_A2250at 2613.358 kb on + strand, within Rru_A2250at 2613.358 kb on + strand, within Rru_A2250at 2613.359 kb on - strand, within Rru_A2250

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,610,574 - +0.2
2,610,574 - +0.1
2,610,672 + Rru_A2248 0.27 +0.8
2,610,673 - Rru_A2248 0.27 +0.4
2,610,673 - Rru_A2248 0.27 -2.3
2,610,673 - Rru_A2248 0.27 -0.6
2,610,673 - Rru_A2248 0.27 +0.4
2,610,912 + Rru_A2248 0.70 -1.8
2,610,932 + Rru_A2248 0.73 -0.8
2,610,932 + Rru_A2248 0.73 +0.8
2,610,932 + Rru_A2248 0.73 -0.0
2,610,933 - Rru_A2248 0.73 -0.5
2,610,933 - Rru_A2248 0.73 +0.4
2,610,936 + Rru_A2248 0.74 +0.8
2,610,937 - Rru_A2248 0.74 -0.6
2,610,990 + Rru_A2248 0.84 -0.4
2,610,991 - Rru_A2248 0.84 -0.2
2,610,991 - Rru_A2248 0.84 -1.2
2,610,991 - Rru_A2248 0.84 -0.5
2,611,132 + +0.0
2,611,205 + -0.6
2,611,206 - -0.3
2,611,206 - +0.3
2,611,370 + -4.0
2,611,370 + -0.0
2,611,370 + +0.5
2,611,370 + -0.3
2,611,370 + -1.2
2,611,370 + -0.6
2,611,370 + +0.1
2,611,371 - +2.4
2,611,523 - Rru_A2249 0.11 +0.7
2,611,523 - Rru_A2249 0.11 +0.3
2,611,523 - Rru_A2249 0.11 +0.2
2,611,629 - Rru_A2249 0.21 -0.6
2,611,940 + Rru_A2249 0.51 +0.5
2,611,940 + Rru_A2249 0.51 +0.2
2,611,941 - Rru_A2249 0.51 -0.1
2,611,941 - Rru_A2249 0.51 +0.3
2,612,002 + Rru_A2249 0.57 +0.7
2,612,002 + Rru_A2249 0.57 +0.9
2,612,221 + Rru_A2249 0.78 -0.4
2,612,222 - Rru_A2249 0.78 +0.8
2,612,222 - Rru_A2249 0.78 -0.0
2,612,222 - Rru_A2249 0.78 +0.3
2,612,222 - Rru_A2249 0.78 +0.4
2,612,366 - -3.0
2,612,366 - +0.7
2,612,558 - -0.7
2,612,601 + +0.1
2,612,602 - -0.6
2,612,602 - -1.0
2,612,679 + -0.4
2,612,679 + -0.4
2,612,680 - -0.9
2,612,680 - -0.7
2,612,680 - +0.2
2,612,680 - -2.3
2,612,680 - -1.1
2,612,680 - -1.0
2,612,680 - -0.8
2,612,680 - -1.3
2,612,680 - -1.3
2,612,680 - -0.2
2,612,680 - +0.4
2,612,680 - -1.3
2,612,681 + +0.9
2,612,681 + +0.5
2,612,682 - -0.5
2,612,682 - -1.7
2,612,738 + -0.5
2,612,739 - -0.1
2,612,739 - -0.8
2,612,777 + -0.6
2,612,777 + -0.5
2,612,778 - -2.3
2,612,778 - -2.3
2,612,778 - -2.0
2,612,778 - -2.2
2,613,358 + Rru_A2250 0.84 -1.0
2,613,358 + Rru_A2250 0.84 +0.8
2,613,358 + Rru_A2250 0.84 -2.7
2,613,358 + Rru_A2250 0.84 -0.5
2,613,359 - Rru_A2250 0.84 -0.3

Or see this region's nucleotide sequence