Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2230

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2228 and Rru_A2229 overlap by 4 nucleotidesRru_A2229 and Rru_A2230 are separated by 378 nucleotidesRru_A2230 and Rru_A2231 overlap by 10 nucleotides Rru_A2228: Rru_A2228 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 2,587,054 to 2,588,706 _A2228 Rru_A2229: Rru_A2229 - Response regulator receiver domain protein (CheY) (NCBI), at 2,588,703 to 2,589,092 _A2229 Rru_A2230: Rru_A2230 - Glycosyl transferase, family 9 (NCBI), at 2,589,471 to 2,590,463 _A2230 Rru_A2231: Rru_A2231 - Glycosyl transferase, family 25 (NCBI), at 2,590,454 to 2,591,221 _A2231 Position (kb) 2589 2590 2591Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2588.721 kb on + strandat 2588.721 kb on + strandat 2588.721 kb on + strandat 2588.721 kb on + strandat 2588.722 kb on - strandat 2588.722 kb on - strandat 2588.722 kb on - strandat 2588.722 kb on - strandat 2589.068 kb on + strandat 2589.069 kb on - strandat 2589.069 kb on - strandat 2589.069 kb on - strandat 2589.108 kb on - strandat 2589.177 kb on + strandat 2589.210 kb on + strandat 2589.211 kb on - strandat 2589.211 kb on - strandat 2589.245 kb on + strandat 2589.245 kb on + strandat 2589.247 kb on + strandat 2589.247 kb on + strandat 2589.248 kb on - strandat 2589.248 kb on - strandat 2589.321 kb on + strandat 2589.322 kb on - strandat 2589.322 kb on - strandat 2589.322 kb on - strandat 2589.395 kb on + strandat 2589.400 kb on + strandat 2590.473 kb on + strandat 2590.473 kb on + strandat 2590.473 kb on + strandat 2590.661 kb on - strand, within Rru_A2231at 2590.661 kb on - strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.732 kb on - strand, within Rru_A2231at 2590.732 kb on - strand, within Rru_A2231at 2590.756 kb on + strand, within Rru_A2231at 2590.768 kb on - strand, within Rru_A2231at 2590.813 kb on + strand, within Rru_A2231at 2590.850 kb on + strand, within Rru_A2231at 2590.851 kb on - strand, within Rru_A2231at 2591.011 kb on - strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.047 kb on - strand, within Rru_A2231at 2591.047 kb on - strand, within Rru_A2231at 2591.047 kb on - strand, within Rru_A2231at 2591.073 kb on + strand, within Rru_A2231at 2591.074 kb on - strand, within Rru_A2231at 2591.074 kb on - strand, within Rru_A2231at 2591.266 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,588,721 + -0.8
2,588,721 + +0.4
2,588,721 + +0.1
2,588,721 + -0.0
2,588,722 - -1.1
2,588,722 - -0.6
2,588,722 - +0.1
2,588,722 - -0.9
2,589,068 + +0.8
2,589,069 - -2.3
2,589,069 - -1.2
2,589,069 - -2.0
2,589,108 - +1.3
2,589,177 + -0.1
2,589,210 + -0.1
2,589,211 - -0.0
2,589,211 - +0.5
2,589,245 + +0.1
2,589,245 + +1.8
2,589,247 + +0.2
2,589,247 + +0.1
2,589,248 - -0.5
2,589,248 - -2.3
2,589,321 + +0.6
2,589,322 - -1.0
2,589,322 - +0.1
2,589,322 - -0.2
2,589,395 + +0.8
2,589,400 + +0.3
2,590,473 + +0.2
2,590,473 + +0.4
2,590,473 + +0.6
2,590,661 - Rru_A2231 0.27 +0.4
2,590,661 - Rru_A2231 0.27 -0.8
2,590,731 + Rru_A2231 0.36 +0.0
2,590,731 + Rru_A2231 0.36 -1.2
2,590,731 + Rru_A2231 0.36 -1.4
2,590,731 + Rru_A2231 0.36 +0.4
2,590,732 - Rru_A2231 0.36 -2.6
2,590,732 - Rru_A2231 0.36 -0.7
2,590,756 + Rru_A2231 0.39 -0.3
2,590,768 - Rru_A2231 0.41 +0.1
2,590,813 + Rru_A2231 0.47 +1.3
2,590,850 + Rru_A2231 0.52 -0.1
2,590,851 - Rru_A2231 0.52 +1.1
2,591,011 - Rru_A2231 0.73 -2.8
2,591,046 + Rru_A2231 0.77 -0.1
2,591,046 + Rru_A2231 0.77 +0.6
2,591,046 + Rru_A2231 0.77 -0.3
2,591,046 + Rru_A2231 0.77 -0.4
2,591,046 + Rru_A2231 0.77 -0.2
2,591,046 + Rru_A2231 0.77 +0.3
2,591,046 + Rru_A2231 0.77 -1.6
2,591,047 - Rru_A2231 0.77 +0.8
2,591,047 - Rru_A2231 0.77 -0.1
2,591,047 - Rru_A2231 0.77 -0.6
2,591,073 + Rru_A2231 0.81 +0.0
2,591,074 - Rru_A2231 0.81 -0.2
2,591,074 - Rru_A2231 0.81 -1.4
2,591,266 + -0.4

Or see this region's nucleotide sequence