Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2029

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2027 and Rru_A2028 overlap by 4 nucleotidesRru_A2028 and Rru_A2029 are separated by 78 nucleotidesRru_A2029 and Rru_A2030 are separated by 327 nucleotidesRru_A2030 and Rru_A2031 overlap by 49 nucleotides Rru_A2027: Rru_A2027 - Aminotransferase, class V (NCBI), at 2,340,150 to 2,341,256 _A2027 Rru_A2028: Rru_A2028 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 2,341,253 to 2,341,717 _A2028 Rru_A2029: Rru_A2029 - Serine O-acetyltransferase (NCBI), at 2,341,796 to 2,342,560 _A2029 Rru_A2030: Rru_A2030 - hypothetical protein (NCBI), at 2,342,888 to 2,343,550 _A2030 Rru_A2031: Rru_A2031 - Protein of unknown function UPF0075 (NCBI), at 2,343,502 to 2,344,629 _A2031 Position (kb) 2341 2342 2343Strain fitness (log2 ratio) -3 -2 -1 0 1at 2341.238 kb on - strandat 2341.238 kb on - strandat 2341.238 kb on - strandat 2342.001 kb on + strand, within Rru_A2029at 2342.001 kb on + strand, within Rru_A2029at 2342.699 kb on + strandat 2342.707 kb on + strandat 2342.726 kb on + strandat 2342.726 kb on + strandat 2342.806 kb on + strandat 2342.868 kb on + strandat 2342.868 kb on + strandat 2343.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,341,238 - -0.4
2,341,238 - +0.7
2,341,238 - -0.5
2,342,001 + Rru_A2029 0.27 -0.8
2,342,001 + Rru_A2029 0.27 -2.3
2,342,699 + +1.5
2,342,707 + -0.1
2,342,726 + +1.0
2,342,726 + +0.3
2,342,806 + +0.9
2,342,868 + -3.2
2,342,868 + +0.2
2,343,548 + -0.3

Or see this region's nucleotide sequence