Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1777

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1775 and Rru_A1776 are separated by 20 nucleotidesRru_A1776 and Rru_A1777 are separated by 8 nucleotidesRru_A1777 and Rru_A1778 overlap by 11 nucleotides Rru_A1775: Rru_A1775 - chromosome segregation and condensation protein ScpA (NCBI), at 2,066,473 to 2,067,285 _A1775 Rru_A1776: Rru_A1776 - Peptidase M50 (NCBI), at 2,067,306 to 2,067,992 _A1776 Rru_A1777: Rru_A1777 - Beta-N-acetylhexosaminidase (NCBI), at 2,068,001 to 2,069,020 _A1777 Rru_A1778: Rru_A1778 - hypothetical protein (NCBI), at 2,069,010 to 2,070,080 _A1778 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -3 -2 -1 0 1at 2067.110 kb on + strand, within Rru_A1775at 2067.110 kb on + strand, within Rru_A1775at 2067.334 kb on + strandat 2067.335 kb on - strandat 2067.335 kb on - strandat 2067.681 kb on - strand, within Rru_A1776at 2067.681 kb on - strand, within Rru_A1776at 2067.681 kb on - strand, within Rru_A1776at 2067.681 kb on - strand, within Rru_A1776at 2067.726 kb on - strand, within Rru_A1776at 2067.726 kb on - strand, within Rru_A1776at 2067.726 kb on - strand, within Rru_A1776at 2067.911 kb on - strand, within Rru_A1776at 2067.911 kb on - strand, within Rru_A1776at 2068.048 kb on - strandat 2068.048 kb on - strandat 2068.048 kb on - strandat 2068.351 kb on - strand, within Rru_A1777at 2068.351 kb on - strand, within Rru_A1777at 2068.351 kb on - strand, within Rru_A1777at 2068.358 kb on - strand, within Rru_A1777at 2068.495 kb on + strand, within Rru_A1777at 2068.495 kb on + strand, within Rru_A1777at 2068.495 kb on + strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.585 kb on - strand, within Rru_A1777at 2068.738 kb on - strand, within Rru_A1777at 2068.967 kb on - strandat 2068.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,067,110 + Rru_A1775 0.78 +0.0
2,067,110 + Rru_A1775 0.78 +0.4
2,067,334 + -1.8
2,067,335 - -1.2
2,067,335 - -0.3
2,067,681 - Rru_A1776 0.55 +0.3
2,067,681 - Rru_A1776 0.55 -1.7
2,067,681 - Rru_A1776 0.55 +0.0
2,067,681 - Rru_A1776 0.55 -1.3
2,067,726 - Rru_A1776 0.61 +0.3
2,067,726 - Rru_A1776 0.61 -2.4
2,067,726 - Rru_A1776 0.61 -1.1
2,067,911 - Rru_A1776 0.88 -1.3
2,067,911 - Rru_A1776 0.88 -1.9
2,068,048 - +0.1
2,068,048 - +0.5
2,068,048 - +1.4
2,068,351 - Rru_A1777 0.34 +1.0
2,068,351 - Rru_A1777 0.34 -1.5
2,068,351 - Rru_A1777 0.34 -2.5
2,068,358 - Rru_A1777 0.35 -1.2
2,068,495 + Rru_A1777 0.48 -2.8
2,068,495 + Rru_A1777 0.48 -2.6
2,068,495 + Rru_A1777 0.48 -0.3
2,068,496 - Rru_A1777 0.49 -0.6
2,068,496 - Rru_A1777 0.49 -0.9
2,068,496 - Rru_A1777 0.49 +1.0
2,068,496 - Rru_A1777 0.49 -3.3
2,068,496 - Rru_A1777 0.49 +0.5
2,068,585 - Rru_A1777 0.57 +1.0
2,068,738 - Rru_A1777 0.72 +0.1
2,068,967 - -1.8
2,068,967 - +1.1

Or see this region's nucleotide sequence