Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1412 and Rru_A1413 overlap by 4 nucleotides Rru_A1413 and Rru_A1414 are separated by 384 nucleotides
Rru_A1412: Rru_A1412 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 1,669,441 to 1,670,895
_A1412
Rru_A1413: Rru_A1413 - Protein of unknown function DUF224, cysteine-rich region (NCBI), at 1,670,892 to 1,671,641
_A1413
Rru_A1414: Rru_A1414 - regulatory protein GntR (NCBI), at 1,672,026 to 1,672,802
_A1414
Position (kb)
1670
1671
1672 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1669.895 kb on + strand, within Rru_A1412 at 1670.055 kb on + strand, within Rru_A1412 at 1670.055 kb on + strand, within Rru_A1412 at 1670.055 kb on + strand, within Rru_A1412 at 1670.056 kb on - strand, within Rru_A1412 at 1670.063 kb on + strand, within Rru_A1412 at 1670.063 kb on + strand, within Rru_A1412 at 1670.064 kb on - strand, within Rru_A1412 at 1670.064 kb on - strand, within Rru_A1412 at 1670.166 kb on + strand, within Rru_A1412 at 1670.340 kb on + strand, within Rru_A1412 at 1670.343 kb on - strand, within Rru_A1412 at 1670.418 kb on + strand, within Rru_A1412 at 1670.453 kb on + strand, within Rru_A1412 at 1670.453 kb on + strand, within Rru_A1412 at 1670.453 kb on + strand, within Rru_A1412 at 1670.454 kb on - strand, within Rru_A1412 at 1670.454 kb on - strand, within Rru_A1412 at 1670.454 kb on - strand, within Rru_A1412 at 1671.292 kb on + strand, within Rru_A1413 at 1671.293 kb on - strand, within Rru_A1413 at 1671.293 kb on - strand, within Rru_A1413 at 1671.355 kb on + strand, within Rru_A1413 at 1671.355 kb on + strand, within Rru_A1413 at 1671.754 kb on - strand at 1671.874 kb on + strand at 1671.874 kb on + strand at 1671.874 kb on + strand at 1671.875 kb on - strand at 1671.912 kb on + strand at 1671.981 kb on - strand at 1671.985 kb on + strand at 1671.985 kb on + strand at 1671.986 kb on - strand at 1672.320 kb on + strand, within Rru_A1414 at 1672.321 kb on - strand, within Rru_A1414 at 1672.495 kb on - strand, within Rru_A1414 at 1672.495 kb on - strand, within Rru_A1414 at 1672.508 kb on + strand, within Rru_A1414 at 1672.508 kb on + strand, within Rru_A1414 at 1672.509 kb on - strand, within Rru_A1414 at 1672.515 kb on - strand, within Rru_A1414 at 1672.570 kb on - strand, within Rru_A1414
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,669,895 + Rru_A1412 0.31 +0.3 1,670,055 + Rru_A1412 0.42 -1.4 1,670,055 + Rru_A1412 0.42 -3.8 1,670,055 + Rru_A1412 0.42 -0.3 1,670,056 - Rru_A1412 0.42 -0.2 1,670,063 + Rru_A1412 0.43 +0.1 1,670,063 + Rru_A1412 0.43 -0.0 1,670,064 - Rru_A1412 0.43 -1.6 1,670,064 - Rru_A1412 0.43 +0.0 1,670,166 + Rru_A1412 0.50 -0.3 1,670,340 + Rru_A1412 0.62 -0.0 1,670,343 - Rru_A1412 0.62 -0.4 1,670,418 + Rru_A1412 0.67 -0.9 1,670,453 + Rru_A1412 0.70 -0.4 1,670,453 + Rru_A1412 0.70 -0.4 1,670,453 + Rru_A1412 0.70 +0.2 1,670,454 - Rru_A1412 0.70 -0.1 1,670,454 - Rru_A1412 0.70 -0.1 1,670,454 - Rru_A1412 0.70 -1.3 1,671,292 + Rru_A1413 0.53 +0.3 1,671,293 - Rru_A1413 0.53 -1.8 1,671,293 - Rru_A1413 0.53 -0.1 1,671,355 + Rru_A1413 0.62 -1.1 1,671,355 + Rru_A1413 0.62 -0.1 1,671,754 - +0.2 1,671,874 + -0.4 1,671,874 + -2.5 1,671,874 + -0.2 1,671,875 - +1.5 1,671,912 + +0.7 1,671,981 - +1.2 1,671,985 + +0.5 1,671,985 + +0.7 1,671,986 - +1.9 1,672,320 + Rru_A1414 0.38 +0.2 1,672,321 - Rru_A1414 0.38 +0.8 1,672,495 - Rru_A1414 0.60 +0.5 1,672,495 - Rru_A1414 0.60 +1.1 1,672,508 + Rru_A1414 0.62 -1.4 1,672,508 + Rru_A1414 0.62 +1.5 1,672,509 - Rru_A1414 0.62 +0.5 1,672,515 - Rru_A1414 0.63 -0.9 1,672,570 - Rru_A1414 0.70 +2.4
Or see this region's nucleotide sequence