Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1365 and Rru_A1366 are separated by 257 nucleotides Rru_A1366 and Rru_A1367 are separated by 65 nucleotides Rru_A1367 and Rru_A1368 are separated by 154 nucleotides
Rru_A1365: Rru_A1365 - ribose ABC transporter, periplasmic binding protein (NCBI), at 1,606,498 to 1,607,436
_A1365
Rru_A1366: Rru_A1366 - Transcriptional Regulator, DeoR family (NCBI), at 1,607,694 to 1,608,662
_A1366
Rru_A1367: Rru_A1367 - Sugar isomerase (SIS) (NCBI), at 1,608,728 to 1,609,285
_A1367
Rru_A1368: Rru_A1368 - hypothetical protein (NCBI), at 1,609,440 to 1,611,683
_A1368
Position (kb)
1607
1608
1609 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1607.576 kb on + strand at 1607.685 kb on + strand at 1607.685 kb on + strand at 1607.685 kb on + strand at 1607.686 kb on - strand at 1607.753 kb on - strand at 1607.753 kb on - strand at 1607.789 kb on + strand at 1607.789 kb on + strand at 1607.789 kb on + strand at 1607.791 kb on + strand, within Rru_A1366 at 1607.791 kb on + strand, within Rru_A1366 at 1607.791 kb on + strand, within Rru_A1366 at 1607.791 kb on + strand, within Rru_A1366 at 1607.792 kb on - strand, within Rru_A1366 at 1607.792 kb on - strand, within Rru_A1366 at 1607.792 kb on - strand, within Rru_A1366 at 1608.054 kb on + strand, within Rru_A1366 at 1608.112 kb on + strand, within Rru_A1366 at 1608.112 kb on + strand, within Rru_A1366 at 1608.112 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.130 kb on + strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.131 kb on - strand, within Rru_A1366 at 1608.182 kb on + strand, within Rru_A1366 at 1608.183 kb on - strand, within Rru_A1366 at 1608.183 kb on - strand, within Rru_A1366 at 1608.419 kb on - strand, within Rru_A1366 at 1608.467 kb on + strand, within Rru_A1366 at 1608.467 kb on + strand, within Rru_A1366 at 1608.468 kb on - strand, within Rru_A1366 at 1608.468 kb on - strand, within Rru_A1366 at 1608.468 kb on - strand, within Rru_A1366 at 1608.583 kb on + strand at 1608.583 kb on + strand at 1608.583 kb on + strand at 1608.583 kb on + strand at 1608.583 kb on + strand at 1608.583 kb on + strand at 1608.584 kb on - strand at 1608.584 kb on - strand at 1608.584 kb on - strand at 1608.584 kb on - strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.586 kb on + strand at 1608.587 kb on - strand at 1608.587 kb on - strand at 1608.587 kb on - strand at 1608.587 kb on - strand at 1608.587 kb on - strand at 1608.587 kb on - strand at 1608.589 kb on + strand at 1608.589 kb on + strand at 1608.590 kb on - strand at 1608.590 kb on - strand at 1608.606 kb on - strand at 1608.668 kb on + strand at 1608.668 kb on + strand at 1608.668 kb on + strand at 1608.729 kb on + strand at 1608.729 kb on + strand at 1608.730 kb on - strand at 1609.075 kb on + strand, within Rru_A1367 at 1609.290 kb on + strand at 1609.290 kb on + strand at 1609.291 kb on - strand at 1609.291 kb on - strand at 1609.397 kb on - strand at 1609.407 kb on - strand at 1609.407 kb on - strand at 1609.490 kb on + strand at 1609.491 kb on - strand at 1609.598 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,607,576 + +1.3 1,607,685 + +0.0 1,607,685 + +0.6 1,607,685 + +1.0 1,607,686 - -0.2 1,607,753 - -2.0 1,607,753 - +0.8 1,607,789 + -0.7 1,607,789 + +0.0 1,607,789 + +2.3 1,607,791 + Rru_A1366 0.10 -2.2 1,607,791 + Rru_A1366 0.10 +2.3 1,607,791 + Rru_A1366 0.10 +2.3 1,607,791 + Rru_A1366 0.10 +0.3 1,607,792 - Rru_A1366 0.10 +0.8 1,607,792 - Rru_A1366 0.10 +2.3 1,607,792 - Rru_A1366 0.10 +2.3 1,608,054 + Rru_A1366 0.37 +1.3 1,608,112 + Rru_A1366 0.43 +2.3 1,608,112 + Rru_A1366 0.43 -0.8 1,608,112 + Rru_A1366 0.43 +0.3 1,608,130 + Rru_A1366 0.45 -4.0 1,608,130 + Rru_A1366 0.45 +2.3 1,608,130 + Rru_A1366 0.45 +2.3 1,608,130 + Rru_A1366 0.45 +2.3 1,608,130 + Rru_A1366 0.45 +2.3 1,608,130 + Rru_A1366 0.45 +2.3 1,608,130 + Rru_A1366 0.45 +0.3 1,608,130 + Rru_A1366 0.45 +2.3 1,608,131 - Rru_A1366 0.45 +0.8 1,608,131 - Rru_A1366 0.45 +1.3 1,608,131 - Rru_A1366 0.45 +0.8 1,608,131 - Rru_A1366 0.45 +2.3 1,608,131 - Rru_A1366 0.45 -2.0 1,608,131 - Rru_A1366 0.45 +0.3 1,608,131 - Rru_A1366 0.45 +2.3 1,608,131 - Rru_A1366 0.45 +2.3 1,608,131 - Rru_A1366 0.45 +2.3 1,608,131 - Rru_A1366 0.45 +1.3 1,608,131 - Rru_A1366 0.45 +1.3 1,608,131 - Rru_A1366 0.45 -0.5 1,608,182 + Rru_A1366 0.50 +0.0 1,608,183 - Rru_A1366 0.50 +2.3 1,608,183 - Rru_A1366 0.50 -2.4 1,608,419 - Rru_A1366 0.75 +2.3 1,608,467 + Rru_A1366 0.80 +2.3 1,608,467 + Rru_A1366 0.80 +1.3 1,608,468 - Rru_A1366 0.80 +2.3 1,608,468 - Rru_A1366 0.80 +0.8 1,608,468 - Rru_A1366 0.80 +2.3 1,608,583 + -2.8 1,608,583 + +2.3 1,608,583 + -0.7 1,608,583 + +2.3 1,608,583 + +3.2 1,608,583 + +2.3 1,608,584 - +2.3 1,608,584 - +0.8 1,608,584 - +2.3 1,608,584 - +2.3 1,608,586 + +0.0 1,608,586 + +0.0 1,608,586 + +2.3 1,608,586 + +2.3 1,608,586 + +2.3 1,608,586 + +0.3 1,608,586 + -1.8 1,608,586 + +2.3 1,608,587 - +0.2 1,608,587 - +2.3 1,608,587 - -1.7 1,608,587 - +2.3 1,608,587 - -1.6 1,608,587 - +2.3 1,608,589 + +0.8 1,608,589 + +2.3 1,608,590 - +0.8 1,608,590 - +2.3 1,608,606 - +2.3 1,608,668 + +1.3 1,608,668 + +1.3 1,608,668 + +2.3 1,608,729 + -3.0 1,608,729 + +2.3 1,608,730 - +0.7 1,609,075 + Rru_A1367 0.62 -2.1 1,609,290 + -1.7 1,609,290 + -3.9 1,609,291 - -0.2 1,609,291 - -0.9 1,609,397 - -3.5 1,609,407 - -0.7 1,609,407 - -0.7 1,609,490 + -0.0 1,609,491 - -0.3 1,609,598 + -1.8
Or see this region's nucleotide sequence