Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1366

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1365 and Rru_A1366 are separated by 257 nucleotidesRru_A1366 and Rru_A1367 are separated by 65 nucleotidesRru_A1367 and Rru_A1368 are separated by 154 nucleotides Rru_A1365: Rru_A1365 - ribose ABC transporter, periplasmic binding protein (NCBI), at 1,606,498 to 1,607,436 _A1365 Rru_A1366: Rru_A1366 - Transcriptional Regulator, DeoR family (NCBI), at 1,607,694 to 1,608,662 _A1366 Rru_A1367: Rru_A1367 - Sugar isomerase (SIS) (NCBI), at 1,608,728 to 1,609,285 _A1367 Rru_A1368: Rru_A1368 - hypothetical protein (NCBI), at 1,609,440 to 1,611,683 _A1368 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1607.576 kb on + strandat 1607.685 kb on + strandat 1607.685 kb on + strandat 1607.685 kb on + strandat 1607.686 kb on - strandat 1607.753 kb on - strandat 1607.753 kb on - strandat 1607.789 kb on + strandat 1607.789 kb on + strandat 1607.789 kb on + strandat 1607.791 kb on + strand, within Rru_A1366at 1607.791 kb on + strand, within Rru_A1366at 1607.791 kb on + strand, within Rru_A1366at 1607.791 kb on + strand, within Rru_A1366at 1607.792 kb on - strand, within Rru_A1366at 1607.792 kb on - strand, within Rru_A1366at 1607.792 kb on - strand, within Rru_A1366at 1608.054 kb on + strand, within Rru_A1366at 1608.112 kb on + strand, within Rru_A1366at 1608.112 kb on + strand, within Rru_A1366at 1608.112 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.130 kb on + strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.131 kb on - strand, within Rru_A1366at 1608.182 kb on + strand, within Rru_A1366at 1608.183 kb on - strand, within Rru_A1366at 1608.183 kb on - strand, within Rru_A1366at 1608.419 kb on - strand, within Rru_A1366at 1608.467 kb on + strand, within Rru_A1366at 1608.467 kb on + strand, within Rru_A1366at 1608.468 kb on - strand, within Rru_A1366at 1608.468 kb on - strand, within Rru_A1366at 1608.468 kb on - strand, within Rru_A1366at 1608.583 kb on + strandat 1608.583 kb on + strandat 1608.583 kb on + strandat 1608.583 kb on + strandat 1608.583 kb on + strandat 1608.583 kb on + strandat 1608.584 kb on - strandat 1608.584 kb on - strandat 1608.584 kb on - strandat 1608.584 kb on - strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.586 kb on + strandat 1608.587 kb on - strandat 1608.587 kb on - strandat 1608.587 kb on - strandat 1608.587 kb on - strandat 1608.587 kb on - strandat 1608.587 kb on - strandat 1608.589 kb on + strandat 1608.589 kb on + strandat 1608.590 kb on - strandat 1608.590 kb on - strandat 1608.606 kb on - strandat 1608.668 kb on + strandat 1608.668 kb on + strandat 1608.668 kb on + strandat 1608.729 kb on + strandat 1608.729 kb on + strandat 1608.730 kb on - strandat 1609.075 kb on + strand, within Rru_A1367at 1609.290 kb on + strandat 1609.290 kb on + strandat 1609.291 kb on - strandat 1609.291 kb on - strandat 1609.397 kb on - strandat 1609.407 kb on - strandat 1609.407 kb on - strandat 1609.490 kb on + strandat 1609.491 kb on - strandat 1609.598 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,607,576 + +1.3
1,607,685 + +0.0
1,607,685 + +0.6
1,607,685 + +1.0
1,607,686 - -0.2
1,607,753 - -2.0
1,607,753 - +0.8
1,607,789 + -0.7
1,607,789 + +0.0
1,607,789 + +2.3
1,607,791 + Rru_A1366 0.10 -2.2
1,607,791 + Rru_A1366 0.10 +2.3
1,607,791 + Rru_A1366 0.10 +2.3
1,607,791 + Rru_A1366 0.10 +0.3
1,607,792 - Rru_A1366 0.10 +0.8
1,607,792 - Rru_A1366 0.10 +2.3
1,607,792 - Rru_A1366 0.10 +2.3
1,608,054 + Rru_A1366 0.37 +1.3
1,608,112 + Rru_A1366 0.43 +2.3
1,608,112 + Rru_A1366 0.43 -0.8
1,608,112 + Rru_A1366 0.43 +0.3
1,608,130 + Rru_A1366 0.45 -4.0
1,608,130 + Rru_A1366 0.45 +2.3
1,608,130 + Rru_A1366 0.45 +2.3
1,608,130 + Rru_A1366 0.45 +2.3
1,608,130 + Rru_A1366 0.45 +2.3
1,608,130 + Rru_A1366 0.45 +2.3
1,608,130 + Rru_A1366 0.45 +0.3
1,608,130 + Rru_A1366 0.45 +2.3
1,608,131 - Rru_A1366 0.45 +0.8
1,608,131 - Rru_A1366 0.45 +1.3
1,608,131 - Rru_A1366 0.45 +0.8
1,608,131 - Rru_A1366 0.45 +2.3
1,608,131 - Rru_A1366 0.45 -2.0
1,608,131 - Rru_A1366 0.45 +0.3
1,608,131 - Rru_A1366 0.45 +2.3
1,608,131 - Rru_A1366 0.45 +2.3
1,608,131 - Rru_A1366 0.45 +2.3
1,608,131 - Rru_A1366 0.45 +1.3
1,608,131 - Rru_A1366 0.45 +1.3
1,608,131 - Rru_A1366 0.45 -0.5
1,608,182 + Rru_A1366 0.50 +0.0
1,608,183 - Rru_A1366 0.50 +2.3
1,608,183 - Rru_A1366 0.50 -2.4
1,608,419 - Rru_A1366 0.75 +2.3
1,608,467 + Rru_A1366 0.80 +2.3
1,608,467 + Rru_A1366 0.80 +1.3
1,608,468 - Rru_A1366 0.80 +2.3
1,608,468 - Rru_A1366 0.80 +0.8
1,608,468 - Rru_A1366 0.80 +2.3
1,608,583 + -2.8
1,608,583 + +2.3
1,608,583 + -0.7
1,608,583 + +2.3
1,608,583 + +3.2
1,608,583 + +2.3
1,608,584 - +2.3
1,608,584 - +0.8
1,608,584 - +2.3
1,608,584 - +2.3
1,608,586 + +0.0
1,608,586 + +0.0
1,608,586 + +2.3
1,608,586 + +2.3
1,608,586 + +2.3
1,608,586 + +0.3
1,608,586 + -1.8
1,608,586 + +2.3
1,608,587 - +0.2
1,608,587 - +2.3
1,608,587 - -1.7
1,608,587 - +2.3
1,608,587 - -1.6
1,608,587 - +2.3
1,608,589 + +0.8
1,608,589 + +2.3
1,608,590 - +0.8
1,608,590 - +2.3
1,608,606 - +2.3
1,608,668 + +1.3
1,608,668 + +1.3
1,608,668 + +2.3
1,608,729 + -3.0
1,608,729 + +2.3
1,608,730 - +0.7
1,609,075 + Rru_A1367 0.62 -2.1
1,609,290 + -1.7
1,609,290 + -3.9
1,609,291 - -0.2
1,609,291 - -0.9
1,609,397 - -3.5
1,609,407 - -0.7
1,609,407 - -0.7
1,609,490 + -0.0
1,609,491 - -0.3
1,609,598 + -1.8

Or see this region's nucleotide sequence