Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1233

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1232 and Rru_A1233 overlap by 4 nucleotidesRru_A1233 and Rru_A1234 are separated by 52 nucleotides Rru_A1232: Rru_A1232 - C-terminal processing peptidase S41A (NCBI), at 1,454,447 to 1,455,769 _A1232 Rru_A1233: Rru_A1233 - Peptidase M23B (NCBI), at 1,455,766 to 1,457,241 _A1233 Rru_A1234: Rru_A1234 - Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI), at 1,457,294 to 1,458,865 _A1234 Position (kb) 1455 1456 1457 1458Strain fitness (log2 ratio) -2 -1 0 1at 1455.178 kb on - strand, within Rru_A1232at 1455.846 kb on - strandat 1455.846 kb on - strandat 1455.964 kb on - strand, within Rru_A1233at 1456.004 kb on + strand, within Rru_A1233at 1457.218 kb on + strandat 1457.219 kb on - strandat 1457.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,455,178 - Rru_A1232 0.55 -0.8
1,455,846 - -1.0
1,455,846 - +0.4
1,455,964 - Rru_A1233 0.13 -0.4
1,456,004 + Rru_A1233 0.16 -2.6
1,457,218 + -0.2
1,457,219 - -2.3
1,457,219 - -1.2

Or see this region's nucleotide sequence