Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1221

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1220 and Rru_A1221 are separated by 2 nucleotidesRru_A1221 and Rru_A1222 are separated by 36 nucleotides Rru_A1220: Rru_A1220 - Phage integrase (NCBI), at 1,439,943 to 1,440,935 _A1220 Rru_A1221: Rru_A1221 - hypothetical protein (NCBI), at 1,440,938 to 1,441,924 _A1221 Rru_A1222: Rru_A1222 - Primosomal protein n (NCBI), at 1,441,961 to 1,444,396 _A1222 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1440.919 kb on - strandat 1441.126 kb on + strand, within Rru_A1221at 1441.126 kb on + strand, within Rru_A1221at 1441.126 kb on + strand, within Rru_A1221at 1441.127 kb on - strand, within Rru_A1221at 1441.127 kb on - strand, within Rru_A1221at 1441.127 kb on - strand, within Rru_A1221at 1441.134 kb on + strand, within Rru_A1221at 1441.134 kb on + strand, within Rru_A1221at 1441.134 kb on + strand, within Rru_A1221at 1441.134 kb on + strand, within Rru_A1221at 1441.134 kb on + strand, within Rru_A1221at 1441.135 kb on - strand, within Rru_A1221at 1441.135 kb on - strand, within Rru_A1221at 1441.135 kb on - strand, within Rru_A1221at 1441.135 kb on - strand, within Rru_A1221at 1441.516 kb on + strand, within Rru_A1221at 1441.608 kb on - strand, within Rru_A1221at 1441.828 kb on + strandat 1441.828 kb on + strandat 1441.853 kb on + strandat 1441.853 kb on + strandat 1441.859 kb on + strandat 1441.889 kb on + strandat 1441.889 kb on + strandat 1441.889 kb on + strandat 1441.890 kb on - strandat 1441.891 kb on + strandat 1441.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,440,919 - +0.2
1,441,126 + Rru_A1221 0.19 -1.8
1,441,126 + Rru_A1221 0.19 -1.0
1,441,126 + Rru_A1221 0.19 -0.6
1,441,127 - Rru_A1221 0.19 -0.7
1,441,127 - Rru_A1221 0.19 +0.6
1,441,127 - Rru_A1221 0.19 -0.9
1,441,134 + Rru_A1221 0.20 -2.0
1,441,134 + Rru_A1221 0.20 -1.7
1,441,134 + Rru_A1221 0.20 -1.2
1,441,134 + Rru_A1221 0.20 -0.7
1,441,134 + Rru_A1221 0.20 -1.1
1,441,135 - Rru_A1221 0.20 -0.3
1,441,135 - Rru_A1221 0.20 -2.1
1,441,135 - Rru_A1221 0.20 -1.9
1,441,135 - Rru_A1221 0.20 -0.8
1,441,516 + Rru_A1221 0.59 -0.9
1,441,608 - Rru_A1221 0.68 -3.0
1,441,828 + -0.4
1,441,828 + -3.0
1,441,853 + -1.2
1,441,853 + -0.6
1,441,859 + +2.3
1,441,889 + -1.7
1,441,889 + +0.5
1,441,889 + -1.8
1,441,890 - +0.1
1,441,891 + -0.2
1,441,891 + -0.0

Or see this region's nucleotide sequence