Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0856

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0855 and Rru_A0856 are separated by 148 nucleotidesRru_A0856 and Rru_A0857 are separated by 59 nucleotides Rru_A0855: Rru_A0855 - Asparagine synthase (NCBI), at 1,018,004 to 1,019,938 _A0855 Rru_A0856: Rru_A0856 - hypothetical protein (NCBI), at 1,020,087 to 1,020,992 _A0856 Rru_A0857: Rru_A0857 - Sulfotransferase (NCBI), at 1,021,052 to 1,021,921 _A0857 Position (kb) 1020 1021Strain fitness (log2 ratio) -3 -2 -1 0 1at 1019.229 kb on + strand, within Rru_A0855at 1019.229 kb on + strand, within Rru_A0855at 1019.230 kb on - strand, within Rru_A0855at 1019.352 kb on + strand, within Rru_A0855at 1019.353 kb on - strand, within Rru_A0855at 1019.353 kb on - strand, within Rru_A0855at 1019.493 kb on + strand, within Rru_A0855at 1019.494 kb on - strand, within Rru_A0855at 1019.494 kb on - strand, within Rru_A0855at 1019.616 kb on + strand, within Rru_A0855at 1019.616 kb on + strand, within Rru_A0855at 1019.616 kb on + strand, within Rru_A0855at 1019.616 kb on + strand, within Rru_A0855at 1019.617 kb on - strand, within Rru_A0855at 1019.617 kb on - strand, within Rru_A0855at 1019.617 kb on - strand, within Rru_A0855at 1019.617 kb on - strand, within Rru_A0855at 1019.981 kb on + strandat 1019.981 kb on + strandat 1019.981 kb on + strandat 1019.981 kb on + strandat 1019.981 kb on + strandat 1019.981 kb on + strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1019.982 kb on - strandat 1020.018 kb on + strandat 1020.702 kb on + strand, within Rru_A0856at 1020.990 kb on + strandat 1021.053 kb on + strandat 1021.054 kb on - strandat 1021.054 kb on - strandat 1021.341 kb on - strand, within Rru_A0857at 1021.364 kb on + strand, within Rru_A0857at 1021.365 kb on - strand, within Rru_A0857at 1021.514 kb on + strand, within Rru_A0857at 1021.665 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.721 kb on - strand, within Rru_A0857at 1021.848 kb on + strandat 1021.848 kb on + strandat 1021.915 kb on + strandat 1021.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,019,229 + Rru_A0855 0.63 -3.7
1,019,229 + Rru_A0855 0.63 +0.1
1,019,230 - Rru_A0855 0.63 -1.2
1,019,352 + Rru_A0855 0.70 -1.5
1,019,353 - Rru_A0855 0.70 -1.0
1,019,353 - Rru_A0855 0.70 -3.0
1,019,493 + Rru_A0855 0.77 +0.3
1,019,494 - Rru_A0855 0.77 -0.2
1,019,494 - Rru_A0855 0.77 -0.8
1,019,616 + Rru_A0855 0.83 -0.3
1,019,616 + Rru_A0855 0.83 +0.2
1,019,616 + Rru_A0855 0.83 -0.1
1,019,616 + Rru_A0855 0.83 +0.0
1,019,617 - Rru_A0855 0.83 -2.3
1,019,617 - Rru_A0855 0.83 -0.4
1,019,617 - Rru_A0855 0.83 -0.8
1,019,617 - Rru_A0855 0.83 +1.4
1,019,981 + +1.5
1,019,981 + -0.2
1,019,981 + +0.1
1,019,981 + -0.4
1,019,981 + +1.2
1,019,981 + -1.5
1,019,982 - -0.3
1,019,982 - -0.3
1,019,982 - +0.6
1,019,982 - +0.5
1,019,982 - -0.2
1,019,982 - +0.1
1,019,982 - -0.8
1,019,982 - +0.1
1,019,982 - +0.5
1,019,982 - -3.1
1,019,982 - -1.1
1,020,018 + -0.0
1,020,702 + Rru_A0856 0.68 +1.7
1,020,990 + -2.1
1,021,053 + -0.9
1,021,054 - +1.4
1,021,054 - +0.9
1,021,341 - Rru_A0857 0.33 +0.4
1,021,364 + Rru_A0857 0.36 -0.2
1,021,365 - Rru_A0857 0.36 +0.1
1,021,514 + Rru_A0857 0.53 -0.9
1,021,665 + Rru_A0857 0.70 -0.7
1,021,720 + Rru_A0857 0.77 +0.9
1,021,720 + Rru_A0857 0.77 -0.5
1,021,720 + Rru_A0857 0.77 -0.0
1,021,720 + Rru_A0857 0.77 -0.3
1,021,721 - Rru_A0857 0.77 -1.5
1,021,848 + -1.3
1,021,848 + -0.2
1,021,915 + -1.1
1,021,915 + -0.2

Or see this region's nucleotide sequence