Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0797

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0796 and Rru_A0797 are separated by 391 nucleotidesRru_A0797 and Rru_A0798 are separated by 4 nucleotidesRru_A0798 and Rru_A0799 are separated by 261 nucleotides Rru_A0796: Rru_A0796 - Radical SAM (NCBI), at 950,317 to 951,312 _A0796 Rru_A0797: Rru_A0797 - major facilitator transporter superfamily MFS_1 (NCBI), at 951,704 to 952,939 _A0797 Rru_A0798: Rru_A0798 - 7-keto-8-aminopelargonate synthetase and related enzymes-like (NCBI), at 952,944 to 953,501 _A0798 Rru_A0799: Rru_A0799 - extracellular solute-binding protein, family 5 (NCBI), at 953,763 to 955,358 _A0799 Position (kb) 951 952 953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 951.464 kb on + strandat 951.786 kb on + strandat 951.787 kb on - strandat 951.787 kb on - strandat 951.910 kb on - strand, within Rru_A0797at 951.910 kb on - strand, within Rru_A0797at 951.948 kb on + strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.993 kb on + strand, within Rru_A0797at 951.993 kb on + strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.254 kb on + strand, within Rru_A0797at 952.255 kb on - strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.348 kb on + strand, within Rru_A0797at 952.348 kb on + strand, within Rru_A0797at 952.348 kb on + strand, within Rru_A0797at 952.349 kb on - strand, within Rru_A0797at 952.349 kb on - strand, within Rru_A0797at 952.432 kb on - strand, within Rru_A0797at 952.512 kb on + strand, within Rru_A0797at 952.512 kb on + strand, within Rru_A0797at 952.513 kb on - strand, within Rru_A0797at 952.513 kb on - strand, within Rru_A0797at 952.588 kb on - strand, within Rru_A0797at 952.588 kb on - strand, within Rru_A0797at 952.759 kb on - strand, within Rru_A0797at 952.759 kb on - strand, within Rru_A0797at 952.759 kb on - strand, within Rru_A0797at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.124 kb on + strand, within Rru_A0798at 953.124 kb on + strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.208 kb on - strand, within Rru_A0798at 953.274 kb on - strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.936 kb on + strand, within Rru_A0799

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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951,464 + -0.1
951,786 + -0.6
951,787 - -1.2
951,787 - -0.8
951,910 - Rru_A0797 0.17 -0.2
951,910 - Rru_A0797 0.17 -0.6
951,948 + Rru_A0797 0.20 -0.2
951,949 - Rru_A0797 0.20 -0.5
951,949 - Rru_A0797 0.20 +0.1
951,949 - Rru_A0797 0.20 -0.3
951,949 - Rru_A0797 0.20 +2.4
951,993 + Rru_A0797 0.23 -2.3
951,993 + Rru_A0797 0.23 +0.4
951,994 - Rru_A0797 0.23 +0.2
951,994 - Rru_A0797 0.23 -1.3
951,994 - Rru_A0797 0.23 -0.6
951,994 - Rru_A0797 0.23 -1.7
951,994 - Rru_A0797 0.23 -4.0
951,994 - Rru_A0797 0.23 -0.3
951,994 - Rru_A0797 0.23 -0.9
951,994 - Rru_A0797 0.23 -0.3
952,248 + Rru_A0797 0.44 -0.2
952,248 + Rru_A0797 0.44 +0.4
952,248 + Rru_A0797 0.44 -0.2
952,248 + Rru_A0797 0.44 +0.3
952,249 - Rru_A0797 0.44 +0.3
952,249 - Rru_A0797 0.44 -1.0
952,249 - Rru_A0797 0.44 -0.6
952,254 + Rru_A0797 0.44 +0.1
952,255 - Rru_A0797 0.45 +0.5
952,261 + Rru_A0797 0.45 -0.4
952,261 + Rru_A0797 0.45 +0.1
952,261 + Rru_A0797 0.45 +0.8
952,262 - Rru_A0797 0.45 -0.1
952,262 - Rru_A0797 0.45 +0.3
952,262 - Rru_A0797 0.45 +0.3
952,348 + Rru_A0797 0.52 -0.1
952,348 + Rru_A0797 0.52 +0.4
952,348 + Rru_A0797 0.52 -0.1
952,349 - Rru_A0797 0.52 -0.2
952,349 - Rru_A0797 0.52 -0.7
952,432 - Rru_A0797 0.59 -1.0
952,512 + Rru_A0797 0.65 -0.3
952,512 + Rru_A0797 0.65 +0.2
952,513 - Rru_A0797 0.65 -2.4
952,513 - Rru_A0797 0.65 -0.4
952,588 - Rru_A0797 0.72 -0.2
952,588 - Rru_A0797 0.72 +0.3
952,759 - Rru_A0797 0.85 +0.2
952,759 - Rru_A0797 0.85 -0.0
952,759 - Rru_A0797 0.85 -3.6
953,092 + Rru_A0798 0.27 -1.7
953,092 + Rru_A0798 0.27 -1.0
953,092 + Rru_A0798 0.27 -0.1
953,092 + Rru_A0798 0.27 -0.8
953,092 + Rru_A0798 0.27 +1.5
953,092 + Rru_A0798 0.27 -0.4
953,092 + Rru_A0798 0.27 -0.8
953,092 + Rru_A0798 0.27 +0.5
953,092 + Rru_A0798 0.27 -0.9
953,093 - Rru_A0798 0.27 -2.2
953,093 - Rru_A0798 0.27 -0.6
953,093 - Rru_A0798 0.27 -1.6
953,093 - Rru_A0798 0.27 -3.5
953,093 - Rru_A0798 0.27 +0.7
953,093 - Rru_A0798 0.27 +0.2
953,093 - Rru_A0798 0.27 -0.4
953,124 + Rru_A0798 0.32 -0.2
953,124 + Rru_A0798 0.32 +0.2
953,125 - Rru_A0798 0.32 -0.1
953,125 - Rru_A0798 0.32 +0.9
953,125 - Rru_A0798 0.32 -0.6
953,208 - Rru_A0798 0.47 -0.9
953,274 - Rru_A0798 0.59 -0.6
953,275 + Rru_A0798 0.59 -2.1
953,275 + Rru_A0798 0.59 -3.2
953,275 + Rru_A0798 0.59 -0.2
953,275 + Rru_A0798 0.59 -0.4
953,275 + Rru_A0798 0.59 -0.2
953,275 + Rru_A0798 0.59 +0.1
953,275 + Rru_A0798 0.59 +0.5
953,276 - Rru_A0798 0.59 +0.2
953,276 - Rru_A0798 0.59 -0.2
953,276 - Rru_A0798 0.59 -0.2
953,276 - Rru_A0798 0.59 -1.6
953,276 - Rru_A0798 0.59 -1.3
953,276 - Rru_A0798 0.59 -1.5
953,276 - Rru_A0798 0.59 -1.7
953,276 - Rru_A0798 0.59 -0.0
953,936 + Rru_A0799 0.11 +0.3

Or see this region's nucleotide sequence