Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0640

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0638 and Rru_A0639 are separated by 73 nucleotidesRru_A0639 and Rru_A0640 are separated by 137 nucleotidesRru_A0640 and Rru_A0641 are separated by 115 nucleotidesRru_A0641 and Rru_A0642 overlap by 11 nucleotides Rru_A0638: Rru_A0638 - hypothetical protein (NCBI), at 759,149 to 761,065 _A0638 Rru_A0639: Rru_A0639 - Regulatory protein RecX (NCBI), at 761,139 to 761,735 _A0639 Rru_A0640: Rru_A0640 - ABC-2 transporter component (NCBI), at 761,873 to 762,685 _A0640 Rru_A0641: Rru_A0641 - Prolipoprotein diacylglyceryl transferase (NCBI), at 762,801 to 763,625 _A0641 Rru_A0642: Rru_A0642 - Protein of unknown function DUF185 (NCBI), at 763,615 to 764,709 _A0642 Position (kb) 761 762 763Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 760.987 kb on + strandat 760.987 kb on + strandat 760.987 kb on + strandat 760.988 kb on - strandat 760.988 kb on - strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.037 kb on - strandat 761.038 kb on + strandat 761.052 kb on - strandat 761.159 kb on + strandat 761.159 kb on + strandat 761.160 kb on - strandat 761.160 kb on - strandat 761.656 kb on + strand, within Rru_A0639at 761.657 kb on - strand, within Rru_A0639at 761.855 kb on + strandat 761.855 kb on + strandat 761.856 kb on - strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.987 kb on + strand, within Rru_A0640at 761.988 kb on - strand, within Rru_A0640at 761.988 kb on - strand, within Rru_A0640at 762.148 kb on + strand, within Rru_A0640at 762.228 kb on + strand, within Rru_A0640at 762.228 kb on + strand, within Rru_A0640at 762.229 kb on - strand, within Rru_A0640at 762.229 kb on - strand, within Rru_A0640at 762.325 kb on + strand, within Rru_A0640at 762.325 kb on + strand, within Rru_A0640at 762.325 kb on + strand, within Rru_A0640at 762.326 kb on - strand, within Rru_A0640at 762.326 kb on - strand, within Rru_A0640at 762.326 kb on - strand, within Rru_A0640at 762.338 kb on - strand, within Rru_A0640at 762.344 kb on + strand, within Rru_A0640at 762.344 kb on + strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.410 kb on - strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.422 kb on - strand, within Rru_A0640at 762.422 kb on - strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.482 kb on - strand, within Rru_A0640at 762.482 kb on - strand, within Rru_A0640at 762.482 kb on - strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.668 kb on + strandat 762.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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760,987 + -0.9
760,987 + -0.2
760,987 + -2.3
760,988 - -0.9
760,988 - +0.3
761,036 + +1.5
761,036 + -0.2
761,036 + -2.4
761,036 + +0.1
761,036 + +0.7
761,037 - +0.4
761,038 + +0.2
761,052 - +0.6
761,159 + -0.6
761,159 + +0.5
761,160 - +1.7
761,160 - -1.3
761,656 + Rru_A0639 0.87 +0.5
761,657 - Rru_A0639 0.87 -1.1
761,855 + -1.5
761,855 + +0.1
761,856 - -0.9
761,954 + -0.8
761,954 + -2.0
761,954 + -0.3
761,954 + +0.6
761,954 + +0.9
761,954 + +0.7
761,987 + Rru_A0640 0.14 +0.0
761,988 - Rru_A0640 0.14 -0.3
761,988 - Rru_A0640 0.14 -0.7
762,148 + Rru_A0640 0.34 -0.6
762,228 + Rru_A0640 0.44 -1.7
762,228 + Rru_A0640 0.44 -1.1
762,229 - Rru_A0640 0.44 -0.9
762,229 - Rru_A0640 0.44 -1.0
762,325 + Rru_A0640 0.56 -1.8
762,325 + Rru_A0640 0.56 +0.3
762,325 + Rru_A0640 0.56 +0.4
762,326 - Rru_A0640 0.56 -2.8
762,326 - Rru_A0640 0.56 -1.3
762,326 - Rru_A0640 0.56 -0.5
762,338 - Rru_A0640 0.57 -0.2
762,344 + Rru_A0640 0.58 -0.0
762,344 + Rru_A0640 0.58 -0.3
762,345 - Rru_A0640 0.58 +0.3
762,345 - Rru_A0640 0.58 -0.4
762,345 - Rru_A0640 0.58 -0.5
762,345 - Rru_A0640 0.58 +0.4
762,345 - Rru_A0640 0.58 -0.6
762,410 - Rru_A0640 0.66 +0.4
762,421 + Rru_A0640 0.67 -0.2
762,421 + Rru_A0640 0.67 -4.0
762,421 + Rru_A0640 0.67 -1.0
762,421 + Rru_A0640 0.67 +1.4
762,422 - Rru_A0640 0.68 -0.0
762,422 - Rru_A0640 0.68 -0.4
762,479 + Rru_A0640 0.75 -1.4
762,479 + Rru_A0640 0.75 -0.2
762,479 + Rru_A0640 0.75 -0.3
762,479 + Rru_A0640 0.75 +0.2
762,479 + Rru_A0640 0.75 +0.5
762,479 + Rru_A0640 0.75 -1.0
762,479 + Rru_A0640 0.75 -0.4
762,479 + Rru_A0640 0.75 +0.0
762,480 - Rru_A0640 0.75 +0.2
762,480 - Rru_A0640 0.75 +0.3
762,480 - Rru_A0640 0.75 -0.3
762,480 - Rru_A0640 0.75 -2.5
762,480 - Rru_A0640 0.75 -0.5
762,480 - Rru_A0640 0.75 -2.7
762,480 - Rru_A0640 0.75 -0.4
762,480 - Rru_A0640 0.75 +0.6
762,480 - Rru_A0640 0.75 -0.2
762,480 - Rru_A0640 0.75 +0.3
762,480 - Rru_A0640 0.75 -0.2
762,480 - Rru_A0640 0.75 -0.6
762,480 - Rru_A0640 0.75 +0.5
762,480 - Rru_A0640 0.75 -1.0
762,482 - Rru_A0640 0.75 -0.4
762,482 - Rru_A0640 0.75 -0.3
762,482 - Rru_A0640 0.75 -0.7
762,539 + Rru_A0640 0.82 -2.5
762,539 + Rru_A0640 0.82 -0.5
762,539 + Rru_A0640 0.82 -1.1
762,539 + Rru_A0640 0.82 -0.5
762,540 - Rru_A0640 0.82 -1.1
762,540 - Rru_A0640 0.82 -2.1
762,540 - Rru_A0640 0.82 -0.5
762,540 - Rru_A0640 0.82 -0.6
762,668 + -0.9
762,668 + +2.2

Or see this region's nucleotide sequence