Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0614 and Rru_A0615 are separated by 237 nucleotides Rru_A0615 and Rru_A0616 are separated by 40 nucleotides Rru_A0616 and Rru_A0617 are separated by 15 nucleotides Rru_A0617 and Rru_A0618 are separated by 25 nucleotides
Rru_A0614: Rru_A0614 - hypothetical protein (NCBI), at 728,922 to 729,809
_A0614
Rru_A0615: Rru_A0615 - photosynthetic complex assembly protein (NCBI), at 730,047 to 730,514
_A0615
Rru_A0616: Rru_A0616 - photosynthetic complex assembly protein (NCBI), at 730,555 to 731,229
_A0616
Rru_A0617: Rru_A0617 - Photosynthetic reaction center, H-chain (NCBI), at 731,245 to 732,018
_A0617
Rru_A0618: Rru_A0618 - PUCC protein (NCBI), at 732,044 to 733,486
_A0618
Position (kb) 730
731
732 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.619 kb on + strand, within Rru_A0614 at 729.619 kb on + strand, within Rru_A0614 at 729.620 kb on - strand, within Rru_A0614 at 729.716 kb on + strand, within Rru_A0614 at 729.717 kb on - strand, within Rru_A0614 at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.781 kb on + strand at 729.782 kb on - strand at 730.048 kb on + strand at 730.049 kb on - strand at 730.081 kb on + strand at 730.082 kb on - strand at 730.195 kb on + strand, within Rru_A0615 at 730.268 kb on + strand, within Rru_A0615 at 730.269 kb on - strand, within Rru_A0615 at 730.269 kb on - strand, within Rru_A0615 at 730.488 kb on + strand at 730.488 kb on + strand at 730.489 kb on - strand at 730.656 kb on + strand, within Rru_A0616 at 730.656 kb on + strand, within Rru_A0616 at 730.656 kb on + strand, within Rru_A0616 at 730.656 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.659 kb on - strand, within Rru_A0616 at 730.659 kb on - strand, within Rru_A0616 at 730.735 kb on - strand, within Rru_A0616 at 730.775 kb on + strand, within Rru_A0616 at 730.776 kb on - strand, within Rru_A0616 at 730.776 kb on - strand, within Rru_A0616 at 730.832 kb on + strand, within Rru_A0616 at 730.873 kb on - strand, within Rru_A0616 at 730.934 kb on + strand, within Rru_A0616 at 730.935 kb on - strand, within Rru_A0616 at 730.935 kb on - strand, within Rru_A0616 at 730.935 kb on - strand, within Rru_A0616 at 730.935 kb on - strand, within Rru_A0616 at 730.935 kb on - strand, within Rru_A0616 at 730.964 kb on + strand, within Rru_A0616 at 730.964 kb on + strand, within Rru_A0616 at 730.965 kb on - strand, within Rru_A0616 at 731.051 kb on + strand, within Rru_A0616 at 731.051 kb on + strand, within Rru_A0616 at 731.052 kb on - strand, within Rru_A0616 at 731.093 kb on + strand, within Rru_A0616 at 731.246 kb on + strand at 731.247 kb on - strand at 731.247 kb on - strand at 731.279 kb on + strand at 731.279 kb on + strand at 731.282 kb on + strand at 731.283 kb on - strand at 731.792 kb on + strand, within Rru_A0617 at 731.793 kb on - strand, within Rru_A0617 at 731.930 kb on + strand, within Rru_A0617 at 731.931 kb on - strand, within Rru_A0617 at 731.931 kb on - strand, within Rru_A0617 at 731.993 kb on + strand at 731.993 kb on + strand at 732.012 kb on + strand at 732.013 kb on - strand at 732.013 kb on - strand at 732.013 kb on - strand at 732.045 kb on + strand at 732.046 kb on - strand at 732.142 kb on + strand at 732.142 kb on + strand at 732.142 kb on + strand at 732.142 kb on + strand at 732.162 kb on - strand at 732.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 729,565 + Rru_A0614 0.72 -3.0 729,565 + Rru_A0614 0.72 -2.8 729,565 + Rru_A0614 0.72 -2.1 729,565 + Rru_A0614 0.72 -5.2 729,565 + Rru_A0614 0.72 +0.8 729,566 - Rru_A0614 0.73 -5.0 729,566 - Rru_A0614 0.73 -1.2 729,566 - Rru_A0614 0.73 -2.1 729,619 + Rru_A0614 0.78 -3.4 729,619 + Rru_A0614 0.78 -2.7 729,620 - Rru_A0614 0.79 -2.7 729,716 + Rru_A0614 0.89 -2.8 729,717 - Rru_A0614 0.90 -2.8 729,779 + +0.1 729,779 + -3.9 729,779 + -4.0 729,779 + -0.5 729,779 + -1.4 729,779 + -3.6 729,779 + -2.0 729,780 - -1.3 729,780 - -2.0 729,780 - -1.8 729,780 - -3.6 729,780 - -2.9 729,781 + -2.7 729,782 - -2.3 730,048 + -0.6 730,049 - -0.0 730,081 + -2.5 730,082 - -3.3 730,195 + Rru_A0615 0.32 -1.1 730,268 + Rru_A0615 0.47 -2.3 730,269 - Rru_A0615 0.47 -1.7 730,269 - Rru_A0615 0.47 -1.4 730,488 + -3.9 730,488 + -2.9 730,489 - -1.6 730,656 + Rru_A0616 0.15 -2.5 730,656 + Rru_A0616 0.15 -2.5 730,656 + Rru_A0616 0.15 -3.2 730,656 + Rru_A0616 0.15 -2.6 730,658 + Rru_A0616 0.15 -3.7 730,658 + Rru_A0616 0.15 -2.3 730,658 + Rru_A0616 0.15 -2.5 730,658 + Rru_A0616 0.15 -3.7 730,659 - Rru_A0616 0.15 -0.7 730,659 - Rru_A0616 0.15 -1.2 730,735 - Rru_A0616 0.27 -2.3 730,775 + Rru_A0616 0.33 -4.2 730,776 - Rru_A0616 0.33 -4.4 730,776 - Rru_A0616 0.33 -3.3 730,832 + Rru_A0616 0.41 -1.8 730,873 - Rru_A0616 0.47 -1.5 730,934 + Rru_A0616 0.56 -1.6 730,935 - Rru_A0616 0.56 -1.0 730,935 - Rru_A0616 0.56 -2.1 730,935 - Rru_A0616 0.56 -5.0 730,935 - Rru_A0616 0.56 -1.3 730,935 - Rru_A0616 0.56 -2.3 730,964 + Rru_A0616 0.61 -1.4 730,964 + Rru_A0616 0.61 -2.8 730,965 - Rru_A0616 0.61 -2.8 731,051 + Rru_A0616 0.73 -0.9 731,051 + Rru_A0616 0.73 +0.6 731,052 - Rru_A0616 0.74 -4.0 731,093 + Rru_A0616 0.80 -1.8 731,246 + +0.2 731,247 - -1.5 731,247 - -1.2 731,279 + -4.2 731,279 + -2.7 731,282 + -1.6 731,283 - -1.1 731,792 + Rru_A0617 0.71 -2.5 731,793 - Rru_A0617 0.71 -1.3 731,930 + Rru_A0617 0.89 -3.2 731,931 - Rru_A0617 0.89 -2.3 731,931 - Rru_A0617 0.89 -1.1 731,993 + -2.7 731,993 + -0.5 732,012 + -2.8 732,013 - -4.4 732,013 - -1.9 732,013 - -1.7 732,045 + -1.9 732,046 - -3.5 732,142 + -3.3 732,142 + -3.3 732,142 + -0.8 732,142 + -0.7 732,162 - -2.5 732,162 - -3.9
Or see this region's nucleotide sequence